PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_24774-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 354aa MW: 39077.4 Da PI: 4.863 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 175.1 | 2e-54 | 19 | 149 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdee+v++yL++kv ++++++ +vi++vd++k+ePwdLp k+k +ekew+fF+++ +ky+tg+r+nrat++gyWkatgkdke+++ TRIUR3_24774-P1 19 LPPGFRFHPTDEEVVTHYLTRKVLRESFSC-QVIADVDLNKTEPWDLPGKAKMGEKEWFFFVHKGRKYPTGTRTNRATEKGYWKATGKDKEIFR 111 79****************************.99***************99999****************************************9 PP NAM 95 k...kgelvglkktLvfykgrapkgektdWvmheyrle 129 + lvg+kktLvfy+grap+g kt Wvmheyrle TRIUR3_24774-P1 112 GkgrDAVLVGMKKTLVFYTGRAPSGGKTPWVMHEYRLE 149 84444445****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.93E-62 | 15 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.378 | 19 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.9E-28 | 20 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MSDVTAVMDL EVEEPKLALP PGFRFHPTDE EVVTHYLTRK VLRESFSCQV IADVDLNKTE 60 PWDLPGKAKM GEKEWFFFVH KGRKYPTGTR TNRATEKGYW KATGKDKEIF RGKGRDAVLV 120 GMKKTLVFYT GRAPSGGKTP WVMHEYRLEG ELPHRLPRTA KDDWAVCRVF NKDLAAKNAP 180 QMAPAAGGAM EDPLAFLDDL LIDTNLNLFD DADLPMLMDS PSGADDFAGA SSSTSSAALP 240 LEPDAEHLTI KMEPPPPQQQ QMQSPDYFMP ATANGNLGGA GYSTYQAVVD QQAAIRMYCK 300 PKAEVASSSA LGLDMGALAG ADTSFLMPSS RSYLDLEELF RGEALMDYSD MWKI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-54 | 8 | 178 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-54 | 8 | 178 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-54 | 8 | 178 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-54 | 8 | 178 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-54 | 8 | 178 | 7 | 174 | NAC domain-containing protein 19 |
3swm_B | 4e-54 | 8 | 178 | 7 | 174 | NAC domain-containing protein 19 |
3swm_C | 4e-54 | 8 | 178 | 7 | 174 | NAC domain-containing protein 19 |
3swm_D | 4e-54 | 8 | 178 | 7 | 174 | NAC domain-containing protein 19 |
3swp_A | 4e-54 | 8 | 178 | 7 | 174 | NAC domain-containing protein 19 |
3swp_B | 4e-54 | 8 | 178 | 7 | 174 | NAC domain-containing protein 19 |
3swp_C | 4e-54 | 8 | 178 | 7 | 174 | NAC domain-containing protein 19 |
3swp_D | 4e-54 | 8 | 178 | 7 | 174 | NAC domain-containing protein 19 |
4dul_A | 4e-54 | 8 | 178 | 4 | 171 | NAC domain-containing protein 19 |
4dul_B | 4e-54 | 8 | 178 | 4 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ010830 | 0.0 | AJ010830.1 Triticum sp. mRNA for GRAB2 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020166616.1 | 0.0 | NAC domain-containing protein 92-like isoform X2 | ||||
TrEMBL | T1N315 | 0.0 | T1N315_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_24774-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1862 | 38 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-79 | NAC domain containing protein 100 |