PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_24658-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 1015aa MW: 111238 Da PI: 5.0763 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.6 | 6.7e-19 | 50 | 96 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l +av+ + g++Wk+Ia++++ Rt+ qc +rwqk+l TRIUR3_24658-P1 50 KGNWTPEEDDILSRAVQTYNGKNWKKIAECFP-DRTDVQCLHRWQKVL 96 79******************************.************986 PP | |||||||
2 | Myb_DNA-binding | 46.7 | 7.2e-15 | 128 | 168 | 7 | 48 |
HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 Ed+++v+ vk++G++ W+tIa+ ++ gR +kqc++rw+++l TRIUR3_24658-P1 128 HEDDIIVEMVKKYGPKKWSTIAQALP-GRIGKQCRERWHNHL 168 7*************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 49 | 1.4e-15 | 174 | 216 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE+ l++a++++G++ W+ + ++ gRt++++k++w+ TRIUR3_24658-P1 174 KDAWTQEEEITLIHAHRMYGNK-WAELTKFLP-GRTDNSIKNHWN 216 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.312 | 45 | 100 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.41E-18 | 47 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-17 | 49 | 98 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.2E-17 | 50 | 96 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-20 | 51 | 108 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.31E-15 | 52 | 96 | No hit | No description |
SMART | SM00717 | 1.6E-9 | 121 | 170 | IPR001005 | SANT/Myb domain |
Pfam | PF13921 | 2.3E-15 | 128 | 185 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.4E-23 | 128 | 176 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.51 | 129 | 168 | IPR017930 | Myb domain |
CDD | cd00167 | 3.24E-12 | 129 | 168 | No hit | No description |
SuperFamily | SSF46689 | 1.07E-27 | 148 | 224 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.226 | 169 | 223 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-14 | 173 | 221 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.27E-11 | 176 | 216 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.3E-21 | 177 | 223 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1015 aa Download sequence Send to blast |
MTSDKGKAPK KAGEASGQPS TTHEGKVSNE PQRQRSLNGR TTGPTRCSTK GNWTPEEDDI 60 LSRAVQTYNG KNWKKIAECF PDRTDVQCLH RWQKVLNPEL IKGPWSKEVG PLFDLFPFSG 120 LLSILYAHED DIIVEMVKKY GPKKWSTIAQ ALPGRIGKQC RERWHNHLNP GINKDAWTQE 180 EEITLIHAHR MYGNKWAELT KFLPGRTDNS IKNHWNSSVK KKIDSYMSSG LLAQVSRLPL 240 IEHHAHFNSS PAITQQNSED SDSNAVREVE DSSGCSQSSL AMVSCSQAQD TNLALSCDLH 300 VNADPSKTEA HDSQSSMCQE GYTSTEGVAS ALSEVHCHAS SSRFGPDKLL QQEISQRMDL 360 QMDIDETPGN SMFENNQTIC STSNNERPML QYEIAPDMPI SVLTNVSGAE PKLHFMSEAD 420 FSSPNCLKSE LWQDVSFQSL LSGPDVVDAD SLSRLNHHSD THSSEADTHF LAAPNPSHTS 480 NPSSMMMAAY GQDPSLSVPQ SLIPNGLSDV ADEKSREMQV SGSEMITCMH DSFGDSEQFA 540 TPGSTDGRHG ASAIIERIPE YGDKQLTDAE EPASSMAKEP PLAQGEAASD EKQDKGALFY 600 EPPRFPSMDV PFVSCDLVTS GDLQEYSPLG IRQLMRSTMS VTTPLRLWGS PTHDESPDVV 660 LKSAAKSFIS TPSILKKRPR DLSSPTLEKG IEKKSRTEQD SGVLGTSSVS AQTSCMHAIK 720 DKGLVTESVF CTNRSSSFKP LEKKLEFCDE NKGNLGESEQ AKDGRNAQNN HPVDEHARGE 780 QCSTANMVNI NDEPPATVLV EHKGNDISDH GANAMYQKMN TNLEALSACK ETFAKSKSGE 840 LIAEKSSPCI QMDYEYVNIL ADTPGVKRGL ESPSAWKSPW FIDMQYKGSY FISPADTTYD 900 ALGLMKRINV QSASALADAR EVLASGSQCG NKDFDEENKE NIDAENETGT GKPQNKIMAE 960 ARVLDFNECA TPPVVLLFVA PVTLYFVTGP LSGTHSSPER ILGLLKVVSS VNLCC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 9e-64 | 50 | 223 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 9e-64 | 50 | 223 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00466 | DAP | Transfer from AT4G32730 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HE996827 | 0.0 | HE996827.1 Triticum aestivum cv. Arina SNP, chromosome 3B, clone Taes_arina_ctg_69800. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020153263.1 | 0.0 | transcription factor MYB3R-1-like isoform X2 | ||||
TrEMBL | M7YPQ4 | 0.0 | M7YPQ4_TRIUA; Myb-related protein 3R-1 | ||||
STRING | TRIUR3_24658-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2495 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.2 | 1e-157 | Homeodomain-like protein |