PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_24314-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARR-B
Protein Properties Length: 716aa    MW: 77166 Da    PI: 7.022
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_24314-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.63.3e-24212261151
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                      +pr++W+ eLH++Fv av++L G++kA+Pk+ilelm+v+ Lt+e+v+SHLQ
  TRIUR3_24314-P1 212 RPRVVWSVELHRKFVAAVNHL-GIDKAVPKRILELMNVEKLTRENVASHLQ 261
                      59*******************.***************************** PP
2Response_reg76.78.2e-26231311109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl vdD+p+ +++l+++l++ +y +v+++ ++  al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++ +ge +++ + +  
  TRIUR3_24314-P1  23 VLAVDDDPVCLKVLETLLRRCQY-HVTATNQAVIALRMLRENRdmFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGETKTVMKGITH 114
                      799********************.***************99999********************87754.558********************* PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga d+l Kp+ +eel++
  TRIUR3_24314-P1 115 GACDYLLKPVRIEELRN 131
                      ***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23007.5E-4120175No hitNo description
SuperFamilySSF521723.13E-3420147IPR011006CheY-like superfamily
SMARTSM004485.8E-3021133IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.75322137IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.8E-2323132IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.05E-2524136No hitNo description
PROSITE profilePS512949.422209269IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.6E-24210262IPR009057Homeodomain-like
SuperFamilySSF466894.3E-15210262IPR009057Homeodomain-like
TIGRFAMsTIGR015574.0E-22213262IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MRTDVRRGAA ATGRDKFPVG MRVLAVDDDP VCLKVLETLL RRCQYHVTAT NQAVIALRML  60
RENRDMFDLV ISDVHMPDMD GFKLLELVGL EMDLPVIMLS VNGETKTVMK GITHGACDYL  120
LKPVRIEELR NIWQHVVRRK FSTRDSVNLD TYEECNKPPS ADSDYVFGQV TCGSPDQSGR  180
PSKKRKEYHS EEEDEDEDSS GQDNDDPSAP KRPRVVWSVE LHRKFVAAVN HLGIDKAVPK  240
RILELMNVEK LTRENVASHL QASHLIYFLV VISRLVPCVF HTCRALSVLQ PAARHSEITF  300
AKYRLYLRRL SAVASQQAGI VAALGGRDPF LRMDAFEGLQ GYQAFTSPAA LSTFSAHGLL  360
NSPRNNQTAV VIQGVATSRS IPTGSSSCTT NPLIGDAAKY HLSLPGNQHG NLGQGLVTSL  420
GQAQLQQKWM NEGSGDLSTI LSGNSRANGM PRMLPSVTSS PLLPPDLVEC TQAKVAIQPS  480
VRAPSASVEL LEGAIGASSG PLESRVSQQS ALPSSGFSAN MLPVHGSFSN NGASFSSNGA  540
TRLGDAFSAS FRPTNDLTVA RGTKVGAGSF GGTIHLSPDT EQKYVSFGSS DSLLDPKLVW  600
SSSQLPSNIG AHYHSMSQRS NNCSIDSSHG GRMFGQTSAS ASTAAPQTKF DILFSGDTSM  660
ARNASESGAQ RLQSELSSST CSFDGLLNSM IKVEKDDAAF GGDDLGCDFY SLGACI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-22208261154ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3758490.0AK375849.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3107L06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020170131.10.0two-component response regulator ORR23-like
SwissprotB8AEH10.0ORR23_ORYSI; Two-component response regulator ORR23
TrEMBLM7Z4N00.0M7Z4N0_TRIUA; Two-component response regulator ARR12
STRINGTRIUR3_24314-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-100response regulator 12