PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_24308-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HB-other
Protein Properties Length: 455aa    MW: 50570.7 Da    PI: 7.5843
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_24308-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox15.53e-05143201651
                      S--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC............TS-HHHHHHHHHHH CS
         Homeobox   6 tftkeqleeLeelFek.nrypsaeereeLAkkl............gLterqVkvWFqNr 51 
                      +ft++++  +ee+ +  n  p++  ++ L++ l             ++ +qV++WFqN+
  TRIUR3_24308-P1 143 RFTDTEVAKMEEVLRDlNAMPKHPVIQGLTDDLnaspdrsgdgkvPVQYNQVRNWFQNQ 201
                      699999*********99**************************9999***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF167196.2E-27236348IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MTLLKMLAIT FSRMMIFTGI TSFYGSILQY ARPSSLVRGW VSVSFFAWFI GVVMLGISPS  60
LWFNLIYNTV LEPNKVARVS AFSVGILYGS VKLGILKKIP KAVVYPRKKS VVKTSLTASM  120
KRFEELQKGW TSMTGQAPSL LFRFTDTEVA KMEEVLRDLN AMPKHPVIQG LTDDLNASPD  180
RSGDGKVPVQ YNQVRNWFQN QMSAQSRKMM VPPVAEEHHP VAGSYSGNSS SDGGHVQFEA  240
NSARNGAWYD VAAFMSHRFI ETRDPEVLVR FTWLGPEEDE WVDVCKCVRV RSLQCVDVLP  300
GDLIMCFKEG KEQARYFDAH VLQVQRRRHD VRGCRCRFLV CYDHDHSEDH WGIYNARALN  360
QEFVPLSNVC RRSVHQKAQK PHEMMDVNTD KVTGGGVPIP SDQGGSSDKP VAPLLDSPTS  420
TGSNSVADVE AGGMEATPNG DGADEAHGDK IDVGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A7e-292383726132SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B7e-292383726132SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A7e-292383726132SHH1 SAWADEE
4iur_B7e-292383726132SHH1 SAWADEE
4iut_A7e-292383726132SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B7e-292383726132SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A7e-292383726132SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B7e-292383726132SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A7e-292383726132SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B7e-292383726132SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3648150.0EU364815.1 Triticum aestivum homeobox-like resistance protein (HLRG) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163864.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2-like
SwissprotQ8RWJ77e-62SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLM7Z0Z50.0M7Z0Z5_TRIUA; Uncharacterized protein
STRINGTRIUR3_24308-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41902948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.38e-48sequence-specific DNA binding transcription factors;sequence-specific DNA binding