PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_24110-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 301aa    MW: 33659.5 Da    PI: 6.6383
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_24110-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM123.32.1e-38191291107
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGfrFhPtdee+v++yL++k+++ ++++  +++ v+++++ePwdLpk  k+ a+e+ew+fF+++d+ky+tg+r+nratksgyWkatgkdke+
  TRIUR3_24110-P1  19 LPPGFRFHPTDEEVVTHYLTPKIRNPDFSC-LMVAYVNLNNTEPWDLPKkaKMGAGETEWFFFVHKDRKYPTGTRTNRATKSGYWKATGKDKEI 111
                      79*************************999.679*************95347777999************************************ PP

              NAM  93 lsk...kgelvglkktLv 107
                      ++    +  lvg+kktL+
  TRIUR3_24110-P1 112 FRGiglDAVLVGMKKTLA 129
                      **88888888******96 PP

2NAM461.7e-1413117687129
              NAM  87 gkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrle 129
                      gk ke+++    +  lvg+kktLvfy+grap g+kt+Wvmheyrle
  TRIUR3_24110-P1 131 GKAKEIFRGiglDAVLVGMKKTLVFYRGRAPGGQKTSWVMHEYRLE 176
                      7788888877667788****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-4015128IPR003441NAC domain
PROSITE profilePS5100552.23919199IPR003441NAC domain
PfamPF023654.4E-2820175IPR003441NAC domain
SuperFamilySSF1019413.14E-18131199IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MSDVTAVMHL RGEEPWLALP PGFRFHPTDE EVVTHYLTPK IRNPDFSCLM VAYVNLNNTE  60
PWDLPKKAKM GAGETEWFFF VHKDRKYPTG TRTNRATKSG YWKATGKDKE IFRGIGLDAV  120
LVGMKKTLAP GKAKEIFRGI GLDAVLVGMK KTLVFYRGRA PGGQKTSWVM HEYRLEGELP  180
HRLPRSAKDD WAVCRLFNKE LAAQNAPQMA PAADADMEEE DPFAFLDELL NSDDLLNNAG  240
LLGNADPPML MDYPSGAIDF AGASSSTSSA ALPVELDMEH RTRKTEPPAP QQQSPNYMWK  300
M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-461720515171NO APICAL MERISTEM PROTEIN
1ut4_B1e-461720515171NO APICAL MERISTEM PROTEIN
1ut7_A1e-461720515171NO APICAL MERISTEM PROTEIN
1ut7_B1e-461720515171NO APICAL MERISTEM PROTEIN
3swm_A1e-461720518174NAC domain-containing protein 19
3swm_B1e-461720518174NAC domain-containing protein 19
3swm_C1e-461720518174NAC domain-containing protein 19
3swm_D1e-461720518174NAC domain-containing protein 19
3swp_A1e-461720518174NAC domain-containing protein 19
3swp_B1e-461720518174NAC domain-containing protein 19
3swp_C1e-461720518174NAC domain-containing protein 19
3swp_D1e-461720518174NAC domain-containing protein 19
4dul_A1e-461720515171NAC domain-containing protein 19
4dul_B1e-461720515171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that acts as positive regulator of leaf senescence. Activates NYC1, SGR1, SGR2 and PAO, which are genes involved in chlorophyll catabolic processes. Activates senescence-associated genes, such as RNS1, SAG12 and SAG13. {ECO:0000269|PubMed:27021284}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020166614.10.0NAC domain-containing protein 79-like
SwissprotQ9SQQ62e-71NAC46_ARATH; NAC domain-containing protein 46
TrEMBLT1N1880.0T1N188_TRIUA; Uncharacterized protein
STRINGTRIUR3_24110-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP186238104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.12e-69Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Oda-Yamamizo C, et al.
    Corrigendum: The NAC transcription factor ANAC046 is a positive regulator of chlorophyll degradation and senescence in Arabidopsis leaves.
    Sci Rep, 2016. 6: p. 35125
    [PMID:27759025]
  4. O'Shea C, et al.
    Structures and Short Linear Motif of Disordered Transcription Factor Regions Provide Clues to the Interactome of the Cellular Hub Protein Radical-induced Cell Death1.
    J. Biol. Chem., 2017. 292(2): p. 512-527
    [PMID:27881680]