PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_23944-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 596aa    MW: 63879.7 Da    PI: 7.5093
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_23944-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.44e-09285336655
              AP2   6 VrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a+++a++k++g
  TRIUR3_23944-P1 285 ISRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDQAALKYWG 336
                      589*************77776664346655.77******************98 PP
2AP251.82.1e-16381430355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GV+++++ grW A+I  +s    +k  +lg+fgt eeAa+a++ a+ k++g
  TRIUR3_23944-P1 381 YRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 430
                      9***************999754...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.921254344IPR001471AP2/ERF domain
SMARTSM003806.2E-15285350IPR001471AP2/ERF domain
PfamPF008472.4E-6286336IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-10286345IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.4E-10287345IPR001471AP2/ERF domain
CDDcd000183.24E-12287344No hitNo description
CDDcd000182.46E-22379440No hitNo description
SuperFamilySSF541711.63E-17379439IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-17380438IPR001471AP2/ERF domain
SMARTSM003801.1E-32380444IPR001471AP2/ERF domain
PROSITE profilePS5103218.979380438IPR001471AP2/ERF domain
PfamPF008474.4E-11381430IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
GGSNAAASGW LGFSLSPHMD EHNHVQQQQQ HQGLFYPSSV AAAYSLGSDV ATGGYYSQLA  60
SMPLKSDGSL CIMEALRRTD QQDHHGPKLE DFLGAGQPAM ALSLDNTSNF YYYSGGGGAG  120
GQHGQSHGGG FLQQAYDVYG GPATASVLAA DEDAAAATAM ANWVQVARGA TAYATAENVL  180
SAAADWQQHL HHHPLALSMS SAGSLSSCVT AGAEYGGVVA TVDGGRKRGG ATAGQKQPVH  240
HRKSIDTFGQ RTSQYRGVTR YPSPPHEHVI NAGQEVEQEI NVWLISRHRW TGRYEAHLWD  300
NSCKKEGQTR KGRQGGYDME EKAARAYDQA ALKYWGPSTH INFPLEDYQQ ELEEMKNMTR  360
QEYVAHLRRK SSGFSRGASM YRGVTRHHQH GRWQARIGRV SGNKDLYLGT FGTQEEAAEA  420
YDIAAIKFRG LNAVTNFDIT RYDVDKIMAS NTLLPGELAR RNKDANAAPL PGRWPVYALR  480
QAAAAAGHDN GGVPEADLVT VDGHTPQGGN GARVHMSMSG ASSLVTSLSN SREESPDRGG  540
GLSMLFAKPP QQPATTTAAS PKLMSTLAPL GSWASSARPA AVSIAHMPMF AAWSDA
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0882631e-170BT088263.1 Zea mays full-length cDNA clone ZM_BFc0105N21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155442.10.0AP2-like ethylene-responsive transcription factor ANT isoform X1
SwissprotQ84Z020.0CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLT1N0T00.0T1N0T0_TRIUA; Uncharacterized protein
STRINGTRIUR3_23944-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-118AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]