PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_23872-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family SBP
Protein Properties Length: 312aa    MW: 33633 Da    PI: 8.6586
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_23872-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.53.3e-42479176
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
              SBP  1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76
                     +CqvegC +dls ak+yh rhkvC++h+k p v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+
  TRIUR3_23872-P1  4 RCQVEGCGVDLSGAKQYHCRHKVCSMHTKEPRVVVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKA 79
                     6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114132.522279IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.103.1E-33266IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.66E-40383IPR004333Transcription factor, SBP-box
PfamPF031103.4E-32578IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
XPPRCQVEGC GVDLSGAKQY HCRHKVCSMH TKEPRVVVAG LEQRFCQQCS RFHQLPEFDQ  60
GKRSCRRRLA GHNERRRKAP PGPLATRYGR LAASFEEPGR FRSYLLDFSY PRVPSSVRDA  120
WPGARPGYRM PGEIQWQGNL DLRPHTGAGT GYGHHHAYSS HGGFPGPELP PGGCLAGVAA  180
DSSCALSLLS TQPWDNTPHG ASHDHRSAGF DGHPVGVSPS IMASNYMPPP ASPWGGSRGH  240
EGGRNAPHQQ LPHDVQLHEV HHPAGSSQHG HFSGELELAL QGNRPAPGPR GGDHGSSGGA  300
FDHPGSSSNW SL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-305781184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4478770.0KF447877.1 Triticum aestivum squamosa promoter-binding-like protein 17 (SPL17) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146461.10.0squamosa promoter-binding-like protein 17
SwissprotA3C0571e-132SPL17_ORYSJ; Squamosa promoter-binding-like protein 17
TrEMBLA0A3B6RDQ70.0A0A3B6RDQ7_WHEAT; Uncharacterized protein
TrEMBLT1N0L10.0T1N0L1_TRIUA; Uncharacterized protein
STRINGTRIUR3_23872-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25273787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.11e-43squamosa promoter binding protein-like 9