PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_23644-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NAC

Protein Properties

Length: 214aa MW: 24054.4 Da PI: 9.0898

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_23644-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.2	1.9e-54	16	145	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lp+GfrFhPtdee+++ yL++k+ + +++ ++i evd++k ePw+Lpkk+k +e+ewyf++++d+ky+tg r+nratk+gyWkatgkdke+++ TRIUR3_23644-P1 16 LPMGFRFHPTDEEIITSYLAPKILNPAFDA-TAIGEVDLNKNEPWELPKKAKMGENEWYFYCQKDRKYPTGIRTNRATKAGYWKATGKDKEIVN 108 799************************9.88***********99999************************************* PP NAM 95 k..kgelvglkktLvfykgrapkgektdWvmheyrle 129 ++ l+g+kktLvfykgrap+gekt+Wvmheyrle TRIUR3_23644-P1 109 PhcTSMLIGMKKTLVFYKGRAPSGEKTNWVMHEYRLE 145 9878888**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-60	10	180	IPR003441	NAC domain
PROSITE profile	PS51005	56.668	16	179	IPR003441	NAC domain
Pfam	PF02365	3.7E-28	17	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MADHLQVQQQ QQQLELPMGF RFHPTDEEII TSYLAPKILN PAFDATAIGE VDLNKNEPWE 60 LPKKAKMGEN EWYFYCQKDR KYPTGIRTNR ATKAGYWKAT GKDKEIVNPH CTSMLIGMKK 120 TLVFYKGRAP SGEKTNWVMH EYRLEINKQS TTGLPTAIGN AASINMSSKE YVVCRIFHKN 180 AGSRLSSMVS HEGNGGATPT DKIWSMSMGT DGAC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-49	4	184	3	170	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-49	4	184	3	170	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-49	4	184	3	170	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-49	4	184	3	170	NO APICAL MERISTEM PROTEIN
4dul_A	5e-49	4	184	3	170	NAC domain-containing protein 19
4dul_B	5e-49	4	184	3	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FR819764	0.0	FR819764.1 Hordeum vulgare subsp. vulgare mRNA for NAC transcription factor (NAC019 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020191194.1	1e-138	NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	9e-77	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	T1MZZ4	1e-162	T1MZZ4_TRIUA; Uncharacterized protein
STRING	TRIUR3_23644-P1	1e-162	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1452	37	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07680.2	9e-77	NAC domain containing protein 80

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]