PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_23644-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 214aa    MW: 24054.4 Da    PI: 9.0898
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_23644-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.21.9e-54161451129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lp+GfrFhPtdee+++ yL++k+ +  +++ ++i evd++k ePw+Lpkk+k +e+ewyf++++d+ky+tg r+nratk+gyWkatgkdke+++
  TRIUR3_23644-P1  16 LPMGFRFHPTDEEIITSYLAPKILNPAFDA-TAIGEVDLNKNEPWELPKKAKMGENEWYFYCQKDRKYPTGIRTNRATKAGYWKATGKDKEIVN 108
                      799**************************9.88***************99999***************************************** PP

              NAM  95 k..kgelvglkktLvfykgrapkgektdWvmheyrle 129
                         ++ l+g+kktLvfykgrap+gekt+Wvmheyrle
  TRIUR3_23644-P1 109 PhcTSMLIGMKKTLVFYKGRAPSGEKTNWVMHEYRLE 145
                      9878888****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-6010180IPR003441NAC domain
PROSITE profilePS5100556.66816179IPR003441NAC domain
PfamPF023653.7E-2817144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MADHLQVQQQ QQQLELPMGF RFHPTDEEII TSYLAPKILN PAFDATAIGE VDLNKNEPWE  60
LPKKAKMGEN EWYFYCQKDR KYPTGIRTNR ATKAGYWKAT GKDKEIVNPH CTSMLIGMKK  120
TLVFYKGRAP SGEKTNWVMH EYRLEINKQS TTGLPTAIGN AASINMSSKE YVVCRIFHKN  180
AGSRLSSMVS HEGNGGATPT DKIWSMSMGT DGAC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-4941843170NO APICAL MERISTEM PROTEIN
1ut4_B5e-4941843170NO APICAL MERISTEM PROTEIN
1ut7_A5e-4941843170NO APICAL MERISTEM PROTEIN
1ut7_B5e-4941843170NO APICAL MERISTEM PROTEIN
4dul_A5e-4941843170NAC domain-containing protein 19
4dul_B5e-4941843170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFR8197640.0FR819764.1 Hordeum vulgare subsp. vulgare mRNA for NAC transcription factor (NAC019 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191194.11e-138NAC domain-containing protein 100-like
SwissprotQ9FLJ29e-77NC100_ARATH; NAC domain-containing protein 100
TrEMBLT1MZZ41e-162T1MZZ4_TRIUA; Uncharacterized protein
STRINGTRIUR3_23644-P11e-162(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145237121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07680.29e-77NAC domain containing protein 80
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]