PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_23521-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB_related

Protein Properties

Length: 292aa MW: 30560.4 Da PI: 6.5209

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_23521-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.7	2.3e-07	58	104	2	45
SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwq 45 g WT e + + +a ++ g W++Ia g g+t++++k ++ TRIUR3_23521-P1 58 GGWTWEQNKAFENALALVDLGegeaVWNKIADAAG-GKTAEEIKRHYE 104 56***********99888888********.********95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.041	56	109	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.12E-8	59	114	IPR009057	Homeodomain-like
CDD	cd00167	2.58E-5	60	107	No hit	No description
SMART	SM00717	17	137	174	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-4	138	170	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.34E-7	141	177	IPR009057	Homeodomain-like
CDD	cd00167	0.00491	142	172	No hit	No description
TIGRFAMs	TIGR01557	6.7E-8	142	174	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MVTEGGFGFG SGGWMWEQDM VFENALLLVD LQEGEAVWNN MAGVVEVKKG SGSGSGPGGW 60 TWEQNKAFEN ALALVDLGEG EAVWNKIADA AGGKTAEEIK RHYELLVADV DAIEAGRVPL 120 PVYTDGGSPE EGGSGGKKGC GRYGKGDWRS ISRNFVISRT PTQVASHAQK YFIRLNSMNR 180 ERRRSSIHDI TSVNGEASAA QGPITGTNGQ AAVPGKSPKQ SPHQPGNLPP GVDAFGTTIG 240 QPVGGPLVSA VGTPVTLPVA APPHMGYAMH APVPGTVVPR APMYPMPPPP SR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	9e-14	50	128	2	79	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK366932	0.0	AK366932.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2048J09.
GenBank	AK372619	0.0	AK372619.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3007D08.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002448771.1	1e-103	transcription factor SRM1
Swissprot	Q9FNN6	2e-63	SRM1_ARATH; Transcription factor SRM1
TrEMBL	M7ZBJ3	0.0	M7ZBJ3_TRIUA; Transcription factor MYB1R1
STRING	TRIUR3_23521-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6376	38	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	7e-43	MYB family protein

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]