PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_23486-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bZIP | ||||||||
Protein Properties | Length: 253aa MW: 27385.6 Da PI: 5.8967 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 29.1 | 2.2e-09 | 100 | 140 | 12 | 52 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 12 kNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 NR A r++R++Kka ++ Lee+v+ L+a N++L k+l++ TRIUR3_23486-P1 100 GNRAAVRKYREKKKAHTALLEEEVAHLKAVNQQLVKKLQSH 140 4**********************************999864 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.3E-9 | 89 | 156 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 8.8E-14 | 89 | 157 | No hit | No description |
Pfam | PF07716 | 2.3E-13 | 94 | 146 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14686 | 3.02E-12 | 94 | 148 | No hit | No description |
SuperFamily | SSF57959 | 9.6E-8 | 95 | 141 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0071294 | Biological Process | cellular response to zinc ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MDDGDIDFSN PETFLCEAMG NDPPASCSMG SYFDDILNSD ADHLACTHTH TCNPPVHDLA 60 HHTHTCVHVH TKILSASDDA AETSESLPEG GATKKQRPSG NRAAVRKYRE KKKAHTALLE 120 EEVAHLKAVN QQLVKKLQSH SALEAEVARL RCLLVDIRGR IEGEIGTFPY QRTVKSNDFV 180 DQGSFLGGAQ VMNSCDFRCN DQLYCNPGMQ QARTMEDDGV MSGQVLGQGA GDSMGCVKPG 240 SLNPPGCRGG QML |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporters ZIP3, ZIP4, ZIP5 and ZIP9 during growth in zinc-deficient conditions. ZIP9 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK253086 | 0.0 | AK253086.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf120g05, mRNA sequence. | |||
GenBank | AK353584 | 0.0 | AK353584.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1001E08. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020163267.1 | 1e-171 | basic leucine zipper 19-like | ||||
Swissprot | Q8VY76 | 5e-70 | BZP19_ARATH; Basic leucine zipper 19 | ||||
TrEMBL | M8A6M2 | 0.0 | M8A6M2_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_23486-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4175 | 35 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35040.1 | 1e-59 | bZIP family protein |
Publications ? help Back to Top | |||
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