PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_23382-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 300aa MW: 32649.2 Da PI: 8.1483 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.6 | 1.2e-17 | 85 | 128 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++E++l++d++ ++G++ W++Ia++++ gRt++++k++w++ TRIUR3_23382-P1 85 RGNFTADEQLLILDLHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 128 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 5.064 | 45 | 79 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-7 | 60 | 82 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.51E-22 | 65 | 139 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.86 | 80 | 134 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-24 | 83 | 133 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-15 | 84 | 132 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-16 | 85 | 128 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.50E-12 | 87 | 128 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MGSLAASFAG RRPTCARFAV REETGAAREA RGSGRRRAVG DLCGWKAYSE VGTDRGSLAR 60 AAGLRRTGKS CRLRWLNYLR PDVKRGNFTA DEQLLILDLH SRWGNRWSKI AQHLPGRTDN 120 EIKNYWRTRV QKHAKQLNCD VGSATFKDAM REARGSPGSP RPAEPTPAAA GDPTIGDTSC 180 ASGVTSMATT AATATTYPEN NSPASAVTTS RSASSGSFTS ELCGEEKNLH VHGSGEKTTS 240 GGDWMQEADQ EFWAMHMQIQ PEDGGLFHVD HELSGWVQGF SDVGVSADNL WSLEDIWKMQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 5e-17 | 46 | 126 | 17 | 97 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 4e-17 | 46 | 126 | 17 | 97 | C-Myb DNA-Binding Domain |
1msf_C | 4e-17 | 46 | 126 | 17 | 97 | C-Myb DNA-Binding Domain |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT009018 | 0.0 | BT009018.1 Triticum aestivum clone wdk3c.pk006.n12:fis, full insert mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020155473.1 | 1e-155 | transcription factor MYB108-like | ||||
Swissprot | Q2QZJ8 | 3e-87 | JAMYB_ORYSJ; Transcription factor JAMYB | ||||
TrEMBL | M7ZNL6 | 0.0 | M7ZNL6_TRIUA; Transcription factor MYB21 | ||||
STRING | TRIUR3_23382-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G48000.1 | 5e-46 | myb domain protein 112 |
Publications ? help Back to Top | |||
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