PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_23299-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NAC

Protein Properties

Length: 210aa MW: 23878.1 Da PI: 9.6275

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_23299-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	158	3.8e-49	10	147	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev..ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrF P+deelv++yL kv++++l+ + + evd++ +ePw+Lp +k +++ewyfFs rd+ky+tg r+nrat+sgyWkatgkd+ + TRIUR3_23299-P1 10 LPPGFRFYPSDEELVCHYLLSKVANQRLSGGAAgtMVEVDLHVHEPWELPDVAKLTTNEWYFFSFRDRKYTTGLRTNRATRSGYWKATGKDRVI 103 79***********************76533334***********77777899******************************** PP NAM 93 lsk........kgelvglkktLvfykgrapkgektdWvmheyrl 128 s +++ vg++ktLvfy+grap+g kt Wvmhe+r+ TRIUR3_23299-P1 104 RSLrssssrsgRDAIVGMRKTLVFYRGRAPNGIKTCWVMHEFRI 147 997555555544445*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.15E-59	7	166	IPR003441	NAC domain
PROSITE profile	PS51005	55.57	10	166	IPR003441	NAC domain
Pfam	PF02365	1.5E-27	11	147	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MGLRDIEMTL PPGFRFYPSD EELVCHYLLS KVANQRLSGG AAGTMVEVDL HVHEPWELPD 60 VAKLTTNEWY FFSFRDRKYT TGLRTNRATR SGYWKATGKD RVIRSLRSSS SRSGRDAIVG 120 MRKTLVFYRG RAPNGIKTCW VMHEFRIENP HSPPKEDWVL CRVFHQKKAD AEYAMDGKQE 180 PGGGGVAHKA AAVSGSNYVQ EAHYNYNSLM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-48	1	169	4	168	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-48	1	169	4	168	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-48	1	169	4	168	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-48	1	169	4	168	NO APICAL MERISTEM PROTEIN
3swm_A	5e-48	1	169	7	171	NAC domain-containing protein 19
3swm_B	5e-48	1	169	7	171	NAC domain-containing protein 19
3swm_C	5e-48	1	169	7	171	NAC domain-containing protein 19
3swm_D	5e-48	1	169	7	171	NAC domain-containing protein 19
3swp_A	5e-48	1	169	7	171	NAC domain-containing protein 19
3swp_B	5e-48	1	169	7	171	NAC domain-containing protein 19
3swp_C	5e-48	1	169	7	171	NAC domain-containing protein 19
3swp_D	5e-48	1	169	7	171	NAC domain-containing protein 19
4dul_A	5e-48	1	169	4	168	NAC domain-containing protein 19
4dul_B	5e-48	1	169	4	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250\|UniProtKB:Q7F2L3, ECO:0000269\|PubMed:18813954}.
UniProt	Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269\|PubMed:12837947, ECO:0000269\|PubMed:17122068}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269\|PubMed:16854978}.
UniProt	INDUCTION: Induced by salt and cold stresses. {ECO:0000269\|PubMed:18813954}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK364002	0.0	AK364002.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2020L05.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020173052.1	1e-123	NAC domain-containing protein 76-like
Swissprot	Q5CD17	7e-59	NAC77_ORYSJ; NAC domain-containing protein 77
Swissprot	Q9S851	2e-59	NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBL	M7ZB47	1e-157	M7ZB47_TRIUA; NAC domain-containing protein 77
STRING	TRIUR3_23299-P1	1e-158	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP697	38	166

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	2e-76	NAC domain containing protein 74

Publications ? help Back to Top
Chen C, et al. Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.). J. Exp. Bot., 2014. 65(17): p. 4943-58 [PMID:24962999] Gonçalves B, et al. A conserved role for CUP-SHAPED COTYLEDON genes during ovule development. Plant J., 2015. 83(4): p. 732-42 [PMID:26119568] Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis. Plant J., 2017. 90(3): p. 435-446 [PMID:28161901] Espinosa-Ruiz A, et al. TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana. Development, 2017. 144(9): p. 1619-1628 [PMID:28320734] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]