PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_23299-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 210aa    MW: 23878.1 Da    PI: 9.6275
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_23299-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1583.8e-49101471128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev..ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGfrF P+deelv++yL  kv++++l+   +  + evd++ +ePw+Lp  +k +++ewyfFs rd+ky+tg r+nrat+sgyWkatgkd+ +
  TRIUR3_23299-P1  10 LPPGFRFYPSDEELVCHYLLSKVANQRLSGGAAgtMVEVDLHVHEPWELPDVAKLTTNEWYFFSFRDRKYTTGLRTNRATRSGYWKATGKDRVI 103
                      79*************************76533334***************77777899************************************ PP

              NAM  93 lsk........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       s         +++ vg++ktLvfy+grap+g kt Wvmhe+r+
  TRIUR3_23299-P1 104 RSLrssssrsgRDAIVGMRKTLVFYRGRAPNGIKTCWVMHEFRI 147
                      997555555544445***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-597166IPR003441NAC domain
PROSITE profilePS5100555.5710166IPR003441NAC domain
PfamPF023651.5E-2711147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MGLRDIEMTL PPGFRFYPSD EELVCHYLLS KVANQRLSGG AAGTMVEVDL HVHEPWELPD  60
VAKLTTNEWY FFSFRDRKYT TGLRTNRATR SGYWKATGKD RVIRSLRSSS SRSGRDAIVG  120
MRKTLVFYRG RAPNGIKTCW VMHEFRIENP HSPPKEDWVL CRVFHQKKAD AEYAMDGKQE  180
PGGGGVAHKA AAVSGSNYVQ EAHYNYNSLM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-4811694168NO APICAL MERISTEM PROTEIN
1ut4_B5e-4811694168NO APICAL MERISTEM PROTEIN
1ut7_A5e-4811694168NO APICAL MERISTEM PROTEIN
1ut7_B5e-4811694168NO APICAL MERISTEM PROTEIN
3swm_A5e-4811697171NAC domain-containing protein 19
3swm_B5e-4811697171NAC domain-containing protein 19
3swm_C5e-4811697171NAC domain-containing protein 19
3swm_D5e-4811697171NAC domain-containing protein 19
3swp_A5e-4811697171NAC domain-containing protein 19
3swp_B5e-4811697171NAC domain-containing protein 19
3swp_C5e-4811697171NAC domain-containing protein 19
3swp_D5e-4811697171NAC domain-containing protein 19
4dul_A5e-4811694168NAC domain-containing protein 19
4dul_B5e-4811694168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}.
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3640020.0AK364002.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2020L05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020173052.11e-123NAC domain-containing protein 76-like
SwissprotQ5CD177e-59NAC77_ORYSJ; NAC domain-containing protein 77
SwissprotQ9S8512e-59NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLM7ZB471e-157M7ZB47_TRIUA; NAC domain-containing protein 77
STRINGTRIUR3_23299-P11e-158(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.12e-76NAC domain containing protein 74
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]