PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_23242-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 622aa MW: 69564.9 Da PI: 6.3662

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_23242-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	41.8	3.5e-13	39	96	1	59
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetr 59 +fY+ YA+++GF++r+s+ ++s+r+++i++r+ vCskeg++e+++ + +++++r TRIUR3_23242-P1 39 DFYSLYARHAGFRIRISRYTRSRRDNSIISRRIVCSKEGFHETRNCEglhP----DQKQQER 96 6******************************************99995541....3333333 PP
2	FAR1	89.6	4.4e-28	144	236	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY +YA+ GF+ r+s+ +s+r+++i++r+ vCskeg+re + kk + k++r+r+ tr+gCka+++vkk+++gkw+v+k+e+eHnH+l TRIUR3_23242-P1 144 FYINYARLNGFRARISRYCRSRRDNSIISRQIVCSKEGFREVRAKKeitdEGKTKRPRMITRVGCKAMIVVKKMNSGKWMVSKFEKEHNHSLL 236 9***************************************99999998899999********************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.0E-10	39	95	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	4.3E-26	144	236	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50103	9.178	397	425	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 622 aa Download sequence Send to blast
MEISSHEPSE AEILIGHEDD TELTPCEGMQ FESEDAARDF YSLYARHAGF RIRISRYTRS 60 RRDNSIISRR IVCSKEGFHE TRNCEGLHPD QKQQERTVPP RKLDIRSAHQ DLNPVEKPHS 120 TEEDSVEEPA EGMEFDSEEA AKLFYINYAR LNGFRARISR YCRSRRDNSI ISRQIVCSKE 180 GFREVRAKKE ITDEGKTKRP RMITRVGCKA MIVVKKMNSG KWMVSKFEKE HNHSLLSSKQ 240 APSTSNITSG ENAEFAAKSS DPDEVKVEEY SAGIQCNSTD SLTVLYNQLC QEAIKFAKEG 300 SVTEEIYHVA MSALKEAAEK VAQVKSCHPI MPHRGVSGSE SKHKVVQMKT MSASQCSDVA 360 KQKTTPSQLT MFQESVSKLM FIPTNLLTDS GLANSDSNHP SLCAFTSSGR QCGHGSECSY 420 LHAENRKEDC PEKYQTTAGF IEWEQFYLFK KEERNGQYKL LAAPIEAVPI SYRPAEPIRQ 480 PKRSFCNLGP LPGLVSELTR REKGPHPLVH ATALAYGARV VPVEEAASLI KAIESKIRSG 540 GAKIARLPSS RLTRLVPEAI SMSSSSEDGE ENDHSEPPAV NVEGYCHDDQ ISEEMKLQGE 600 ASELETDSEN CSGHENHDTA DC

Sequence ? help Back to Top

Protein Sequence Length: 622 aa Download sequence Send to blast

MEISSHEPSE AEILIGHEDD TELTPCEGMQ FESEDAARDF YSLYARHAGF RIRISRYTRS  60
RRDNSIISRR IVCSKEGFHE TRNCEGLHPD QKQQERTVPP RKLDIRSAHQ DLNPVEKPHS  120
TEEDSVEEPA EGMEFDSEEA AKLFYINYAR LNGFRARISR YCRSRRDNSI ISRQIVCSKE  180
GFREVRAKKE ITDEGKTKRP RMITRVGCKA MIVVKKMNSG KWMVSKFEKE HNHSLLSSKQ  240
APSTSNITSG ENAEFAAKSS DPDEVKVEEY SAGIQCNSTD SLTVLYNQLC QEAIKFAKEG  300
SVTEEIYHVA MSALKEAAEK VAQVKSCHPI MPHRGVSGSE SKHKVVQMKT MSASQCSDVA  360
KQKTTPSQLT MFQESVSKLM FIPTNLLTDS GLANSDSNHP SLCAFTSSGR QCGHGSECSY  420
LHAENRKEDC PEKYQTTAGF IEWEQFYLFK KEERNGQYKL LAAPIEAVPI SYRPAEPIRQ  480
PKRSFCNLGP LPGLVSELTR REKGPHPLVH ATALAYGARV VPVEEAASLI KAIESKIRSG  540
GAKIARLPSS RLTRLVPEAI SMSSSSEDGE ENDHSEPPAV NVEGYCHDDQ ISEEMKLQGE  600
ASELETDSEN CSGHENHDTA DC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020176088.1	0.0	uncharacterized protein LOC109761678
TrEMBL	M7ZWZ8	0.0	M7ZWZ8_TRIUA; Protein FAR1-RELATED SEQUENCE 7
STRING	TRIUR3_23242-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9031	33	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-28	FAR1-related sequence 5