PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_23146-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NF-YB
Protein Properties Length: 298aa    MW: 31886.9 Da    PI: 6.5126
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_23146-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB153.24.7e-4822115194
            NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                      vreqdr++Pianv+rim+++lPa+akis+dake +qecvsefisfvt+ea+++c+ e+rkt+n++d+lwal  lGf+dy+ pl+v+l++ r+ +
  TRIUR3_23146-P1  22 VREQDRLMPIANVIRIMRRALPAHAKISDDAKEAIQECVSEFISFVTGEANERCHMEHRKTVNAEDILWALNRLGFDDYIVPLSVFLHRMRDPN 115
                      69*****************************************************************************************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.1E-4518122IPR009072Histone-fold
SuperFamilySSF471137.76E-3525149IPR009072Histone-fold
PfamPF008085.1E-252992IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006155.2E-155674No hitNo description
PROSITE patternPS0068505975IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006155.2E-157593No hitNo description
PRINTSPR006155.2E-1594112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0033613Molecular Functionactivating transcription factor binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MENADVPNGA AAPAPTQATP AVREQDRLMP IANVIRIMRR ALPAHAKISD DAKEAIQECV  60
SEFISFVTGE ANERCHMEHR KTVNAEDILW ALNRLGFDDY IVPLSVFLHR MRDPNAATGG  120
AAAGDRRTLM SAPSRAAPPM RHAVPLQAQI QRPVYAPPAQ VQVQNQMQRP VYAPLAPMPV  180
QNQVKWPMYT PPAPVQVQMQ RGVYAPRAPV QGYTVGITPV RPNVGGQCHV FGGERVVAQQ  240
YYGYGYGEGA YGAGSSKGGA CADEGSSSNG VPVPGEGTGE PEAEPAAEGS QDKPVQSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A8e-5122113697NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9027850.0GU902785.1 Triticum monococcum nuclear transcription factor Y subunit B1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178158.11e-161nuclear transcription factor Y subunit B-8-like
TrEMBLM7ZFL10.0M7ZFL1_TRIUA; Nuclear transcription factor Y subunit B-6
STRINGTRIUR3_23146-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.27e-51nuclear factor Y, subunit B6