PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_23134-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NF-YB

Protein Properties

Length: 349aa MW: 39982.8 Da PI: 4.6306

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_23134-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	43.3	8.8e-14	6	75	22	94
NF-YB 22 PanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 ++ki + + ++e +sefi+ +s sd c+r kr +++ ddll +a+ Gf+d++eplk+ l+ky +e TRIUR3_23134-P1 6 LPDGKIDE---GALRELASEFITRRASGESDGCKRAKREAMTVDDLLSEMAKQGFQDHIEPLKACLHKYSRVE 75 45566655...458999****************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.8E-8	15	72	IPR009072	Histone-fold
SuperFamily	SSF81383	1.06E-10	87	147	IPR001810	F-box domain
Gene3D	G3DSA:3.80.10.10	1.4E-21	91	340	IPR032675	Leucine-rich repeat domain, L domain-like
PROSITE profile	PS50181	8.597	92	139	IPR001810	F-box domain
Pfam	PF12937	1.4E-6	95	139	IPR001810	F-box domain
SuperFamily	SSF52047	2.94E-9	179	257	No hit	No description
SuperFamily	SSF52047	2.94E-9	291	343	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MGKVILPDGK IDEGALRELA SEFITRRASG ESDGCKRAKR EAMTVDDLLS EMAKQGFQDH 60 IEPLKACLHK YSRVELPCTM EVEPNPLPMS DVRDWSELPL DVLSAIFMKL GNIEILMGAG 120 LVCRSWLVTA KSPELWRFVD MTRHKVVFSK AESVMCKMAK VAIDRSDGRM ESFWAQKFVT 180 GELLNYIASR CNSLKSIRLI GAYYFWDDEN VIIKLAAKCP MLEEIEYSDQ KQSWSFFTGI 240 GAARPELKRL RVRLPWFDSD SILREMRMEQ RNGDDEDEEE EEEESDEAWE ARHNEEAFAI 300 AESLHELRLL QMAGYGLTNK GVYAILEGCP HLEFLDLREC LHIEVNAEL

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MGKVILPDGK IDEGALRELA SEFITRRASG ESDGCKRAKR EAMTVDDLLS EMAKQGFQDH  60
IEPLKACLHK YSRVELPCTM EVEPNPLPMS DVRDWSELPL DVLSAIFMKL GNIEILMGAG  120
LVCRSWLVTA KSPELWRFVD MTRHKVVFSK AESVMCKMAK VAIDRSDGRM ESFWAQKFVT  180
GELLNYIASR CNSLKSIRLI GAYYFWDDEN VIIKLAAKCP MLEEIEYSDQ KQSWSFFTGI  240
GAARPELKRL RVRLPWFDSD SILREMRMEQ RNGDDEDEEE EEEESDEAWE ARHNEEAFAI  300
AESLHELRLL QMAGYGLTNK GVYAILEGCP HLEFLDLREC LHIEVNAEL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK248578	0.0	AK248578.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf97f03, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020155429.1	0.0	putative F-box/LRR-repeat protein 23
TrEMBL	M7ZSD5	0.0	M7ZSD5_TRIUA; Putative F-box/LRR-repeat protein 23
STRING	TRIUR3_23134-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP548	7	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38880.6	9e-13	nuclear factor Y, subunit B1