PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_22971-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Dof

Protein Properties

Length: 476aa MW: 51932 Da PI: 7.9065

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_22971-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118	3.6e-37	102	161	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + +++cprC+s++tkfCy+nny++sqPr+fC++C+ryWt+GG +rnvPvG+grr+nk++s TRIUR3_22971-P1 102 DIIVPCPRCNSMETKFCYFNNYNVSQPRHFCRNCQRYWTAGGNIRNVPVGSGRRRNKHAS 161 56789****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-28	98	158	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.267	105	159	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.6E-31	105	159	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	107	143	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence Send to blast
MAALRDRGYA AIKLFGRTIP LLDAAAEVVT KLGNDANSND VMPCVSNKLL NVEATPFCSK 60 NREQNDQAIS KHGVEVRTGF KSEEIKTGSD GSGQDKVLKK PDIIVPCPRC NSMETKFCYF 120 NNYNVSQPRH FCRNCQRYWT AGGNIRNVPV GSGRRRNKHA SHFRHAMMSC DANIAAPGDV 180 SNEIHHLALP LLPQVLPGPI KENKTVKEFG SQVPVCKPMS SIHNIEEQKD THLVALASGD 240 NSEEQSCPSP ATVSGCSENQ TPDSAVKKEP SNVLGYYNGI TLPHPHGPAL VFPWSPGWNS 300 IAVMAAAQCS TEPIQGLENV KHGLPPWAPP LMMAAPGICT PVVPFPMMPP PLWSCIPGWP 360 NGMWSSPCPG NNGPPNKITC SEDNSPTLGK HSRESDLQEE NRENNVQVPK TLRIDDPAEA 420 TKSSVRDTLG IKPDEKGMFK PLQMKVLKND KTPESPQALQ ANPAAFLRSQ SFQERT

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence Send to blast

MAALRDRGYA AIKLFGRTIP LLDAAAEVVT KLGNDANSND VMPCVSNKLL NVEATPFCSK  60
NREQNDQAIS KHGVEVRTGF KSEEIKTGSD GSGQDKVLKK PDIIVPCPRC NSMETKFCYF  120
NNYNVSQPRH FCRNCQRYWT AGGNIRNVPV GSGRRRNKHA SHFRHAMMSC DANIAAPGDV  180
SNEIHHLALP LLPQVLPGPI KENKTVKEFG SQVPVCKPMS SIHNIEEQKD THLVALASGD  240
NSEEQSCPSP ATVSGCSENQ TPDSAVKKEP SNVLGYYNGI TLPHPHGPAL VFPWSPGWNS  300
IAVMAAAQCS TEPIQGLENV KHGLPPWAPP LMMAAPGICT PVVPFPMMPP PLWSCIPGWP  360
NGMWSSPCPG NNGPPNKITC SEDNSPTLGK HSRESDLQEE NRENNVQVPK TLRIDDPAEA  420
TKSSVRDTLG IKPDEKGMFK PLQMKVLKND KTPESPQALQ ANPAAFLRSQ SFQERT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020191388.1	0.0	cyclic dof factor 3-like
TrEMBL	M7ZNU7	0.0	M7ZNU7_TRIUA; Dof zinc finger protein DOF3.3
STRING	TRIUR3_22971-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	2e-57	cycling DOF factor 3