PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_22935-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 411aa MW: 45613.8 Da PI: 4.2384 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 159.6 | 1.3e-49 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtd elv++yLk+k+ gkkl + e+i+ev++yk+ PwdLp k ++++++ ew+fF++rdkky++g+r+nrat +gyWk++gkd+++ TRIUR3_22935-P1 6 LPPGFRFHPTDVELVSYYLKRKIMGKKLFV-EAISEVELYKFAPWDLPdKsCLQSKDLEWFFFCPRDKKYPKGSRTNRATPNGYWKTSGKDRTI 98 79*************************999.89**************96347777888************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ vglkktL+f++g+apkg++tdWvm ey++ TRIUR3_22935-P1 99 EL-NSRIVGLKKTLIFHEGKAPKGNRTDWVMYEYKM 133 **.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.62E-59 | 3 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.398 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.8E-26 | 7 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence Send to blast |
MAQTCLPPGF RFHPTDVELV SYYLKRKIMG KKLFVEAISE VELYKFAPWD LPDKSCLQSK 60 DLEWFFFCPR DKKYPKGSRT NRATPNGYWK TSGKDRTIEL NSRIVGLKKT LIFHEGKAPK 120 GNRTDWVMYE YKMEDETLVS AGFSKDAYVL CKIFKKSGLG PRIGEQYGAP FDENEWENLD 180 VGSSIFSFAP SSGVEDPQVE SSALATAIVI HEPSAPQQSV QFSEHVNICS DQVNDAPPEI 240 DGILLDELTK FLNDSPNHDN SGLPPMSELE AQAFEINTAE LYDQLAVLAQ SGDMPAANFP 300 ASNGDVIENN LQQTNSGLAM DDDYIGLDDL FAPGETFSYD FSGETFSYDL PGGTFSYDLS 360 VPNNQFSQYP LDQSSNGHHY GDGAAQSTFL ASGPLPPLEP MPSTFDAFCF Q |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-51 | 2 | 157 | 11 | 169 | Stress-induced transcription factor NAC1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00583 | DAP | Transfer from AT5G64060 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB362161 | 0.0 | AB362161.1 Hordeum vulgare subsp. vulgare mRNA for transcription factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020200154.1 | 0.0 | NAC domain-containing protein 13-like | ||||
Swissprot | Q9FY82 | 3e-79 | NAC82_ARATH; NAC domain-containing protein 82 | ||||
TrEMBL | M7ZDZ9 | 0.0 | M7ZDZ9_TRIUA; NAC domain-containing protein 78 | ||||
STRING | TRIUR3_22935-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4731 | 36 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64060.1 | 3e-84 | NAC domain containing protein 103 |
Publications ? help Back to Top | |||
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