PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_22881-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GRAS

Protein Properties

Length: 796aa MW: 90500.9 Da PI: 8.3405

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_22881-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	305.5	1.3e-93	173	487	1	316
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l++lL++cA+av+++d + a++lL++++ +a pdgd +qRla++f+e+L+arla+++ + ++l +++ s ++ l+a++l+ + + k+s TRIUR3_22881-P1 173 LRTLLIHCAQAVATDDRRSATELLKQIKLHARPDGDGTQRLAHCFAEGLQARLAGTGGLVHQSLMATRIS---AVDMLKAYQLYMAAICFKKVS 263 6789*************************************************888888777777776...9**************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 +l N++I++a g++++HiiD++i++G+QWp++l+ +++Rp+gpp +RiTg++ p++g +e++eetg+rL+k+A+e++vpfe++++++ ++ TRIUR3_22881-P1 264 FLFSNSTIYNASLGKKKIHIIDYGIQYGFQWPCFLRRISTRPGGPPDVRITGIDLPQPGfrPRERIEETGRRLKKYANEFNVPFEYRAIATAKM 357 ******************************************************9*************************9999 PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 e+l+ e+L+++p+E+l+Vn+ +q ++l+desv les+rd vLk +++++P+ ++++ + + +++ F++rf e l yysalfd l+++ pr++e TRIUR3_22881-P1 358 ESLRKEDLKIDPDEVLIVNSLFQFKNLMDESVVLESPRDVVLKNIRKMRPHTFIHAIVNGSFSAPFFVTRFREVLFYYSALFDVLDTTTPRDNE 451 ******************************************************************************************** PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWr 316 +r+ +E+ +lgr++ nv+aceg++r+er et+++W+ TRIUR3_22881-P1 452 QRMLIEQNILGRAALNVIACEGTDRVERPETYKQWQ 487 *********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	57.104	147	525	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.4E-91	173	487	IPR005202	Transcription factor GRAS
Pfam	PF13963	5.1E-21	514	586	IPR029480	Transposase-associated domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 796 aa Download sequence Send to blast
MSSAFLKGMQ EANKFLPSQD KLVIDLEASS GQFFKGVEEG NKFLPREDKL VVGFNGHAAP 60 ASAPAVLSVK KEEVVDAVSA NSGGGRGRKN PYHDDELEQE GGRSSKQSAL GDDVSAREMF 120 DRMLMPSDEM CIVQMQNLRI AMQEAVAKND GGGGKGANGK GRGRRGGSDV VDLRTLLIHC 180 AQAVATDDRR SATELLKQIK LHARPDGDGT QRLAHCFAEG LQARLAGTGG LVHQSLMATR 240 ISAVDMLKAY QLYMAAICFK KVSFLFSNST IYNASLGKKK IHIIDYGIQY GFQWPCFLRR 300 ISTRPGGPPD VRITGIDLPQ PGFRPRERIE ETGRRLKKYA NEFNVPFEYR AIATAKMESL 360 RKEDLKIDPD EVLIVNSLFQ FKNLMDESVV LESPRDVVLK NIRKMRPHTF IHAIVNGSFS 420 APFFVTRFRE VLFYYSALFD VLDTTTPRDN EQRMLIEQNI LGRAALNVIA CEGTDRVERP 480 ETYKQWQLSY SRRVMGSQLG YPENVSGDTS QMNRHWMYAD RRSSDYIEGL HNFLKVAEAN 540 KKNGFMYCPC TVCENTKDYS SSRTLHLHLL EKGFMPHYNV WTKHRERGIM MEDNEEEEDD 600 ANYPMFPEYG DTATRESEDQ EASDVRDDDL RRFIADAQRE CESEREKLKF GRMLEDHKKG 660 YTQIAKMTTQ SSGFGSLLKI MKKKLPKDNE LPDSTHEAKK VLCPLGLEVQ KIHACPNDCI 720 LYRDEYENLN IRQDDPGDVE GERPRKRVPA KVMWYAPIIP QLKRLFRNKE HSKLMRWHKE 780 DRKKDGKLRA PADGSQ

Sequence ? help Back to Top

Protein Sequence Length: 796 aa Download sequence Send to blast

MSSAFLKGMQ EANKFLPSQD KLVIDLEASS GQFFKGVEEG NKFLPREDKL VVGFNGHAAP  60
ASAPAVLSVK KEEVVDAVSA NSGGGRGRKN PYHDDELEQE GGRSSKQSAL GDDVSAREMF  120
DRMLMPSDEM CIVQMQNLRI AMQEAVAKND GGGGKGANGK GRGRRGGSDV VDLRTLLIHC  180
AQAVATDDRR SATELLKQIK LHARPDGDGT QRLAHCFAEG LQARLAGTGG LVHQSLMATR  240
ISAVDMLKAY QLYMAAICFK KVSFLFSNST IYNASLGKKK IHIIDYGIQY GFQWPCFLRR  300
ISTRPGGPPD VRITGIDLPQ PGFRPRERIE ETGRRLKKYA NEFNVPFEYR AIATAKMESL  360
RKEDLKIDPD EVLIVNSLFQ FKNLMDESVV LESPRDVVLK NIRKMRPHTF IHAIVNGSFS  420
APFFVTRFRE VLFYYSALFD VLDTTTPRDN EQRMLIEQNI LGRAALNVIA CEGTDRVERP  480
ETYKQWQLSY SRRVMGSQLG YPENVSGDTS QMNRHWMYAD RRSSDYIEGL HNFLKVAEAN  540
KKNGFMYCPC TVCENTKDYS SSRTLHLHLL EKGFMPHYNV WTKHRERGIM MEDNEEEEDD  600
ANYPMFPEYG DTATRESEDQ EASDVRDDDL RRFIADAQRE CESEREKLKF GRMLEDHKKG  660
YTQIAKMTTQ SSGFGSLLKI MKKKLPKDNE LPDSTHEAKK VLCPLGLEVQ KIHACPNDCI  720
LYRDEYENLN IRQDDPGDVE GERPRKRVPA KVMWYAPIIP QLKRLFRNKE HSKLMRWHKE  780
DRKKDGKLRA PADGSQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-39	177	487	8	315	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK357996	0.0	AK357996.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1066L11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020160240.1	0.0	scarecrow-like protein 34
TrEMBL	M7Z3U0	0.0	M7Z3U0_TRIUA; Uncharacterized protein
STRING	TRIUR3_22881-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-132	SCARECROW-like 14