PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_22706-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 402aa    MW: 43573.2 Da    PI: 6.0546
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_22706-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92e-173077148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed+llv+ v+++G g+W+++ r+ g+ R++k+c++rw ++l
  TRIUR3_22706-P1 30 KGPWTPDEDQLLVEHVRRHGEGSWNAVRRETGLLRCGKSCRLRWANHL 77
                     79******************************99**********9986 PP
2Myb_DNA-binding51.52.3e-1683126146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++++eE+ l+++++++ G++ W++I+++++ gRt++++k++w++
  TRIUR3_22706-P1  83 RGPFSPEEERLILRLHALIGNK-WARISAHLP-GRTDNEIKNYWNT 126
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.9512577IPR017930Myb domain
SuperFamilySSF466899.36E-3127124IPR009057Homeodomain-like
SMARTSM007171.6E-142979IPR001005SANT/Myb domain
PfamPF002494.6E-163077IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-223184IPR009057Homeodomain-like
CDDcd001674.57E-123277No hitNo description
PROSITE patternPS0017504554IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profilePS5129426.72478132IPR017930Myb domain
SMARTSM007176.8E-1782130IPR001005SANT/Myb domain
PfamPF002491.0E-1583126IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-2685131IPR009057Homeodomain-like
CDDcd001672.55E-1285128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MAVEAPQQPE QAAGGSVEQG AAAGGGRLKK GPWTPDEDQL LVEHVRRHGE GSWNAVRRET  60
GLLRCGKSCR LRWANHLRPN LKRGPFSPEE ERLILRLHAL IGNKWARISA HLPGRTDNEI  120
KNYWNTRLKR RKRAGLALYP PDVEREVALV RAGKLRPIVD ADGNASSLQA PLLLDAAADQ  180
FAWPAAPPFH PVFNNVAPPQ PFQFTGNISH NPQALLAAQV PYLHHDEVSA GLGHANKLYA  240
DALGMPPLVP PSAQELPSNQ SPADAGGPLE MLVLEQDQRL PGAALLRVTS MPELVYNEND  300
YSAWPSGLSG GSGSRSEGDV TSHYGGKCDC FFDGVKPAKG MPASLAVAEE EVSGLFGGEE  360
LVAVWPDNPP ESITKDDFNL QMMEMQHLMP PVPLPADEHG LN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-30281315107B-MYB
1h8a_C1e-292813125127MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3731080.0AK373108.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3021G02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171960.10.0transcription factor MYB104-like
TrEMBLM7Z9570.0M7Z957_TRIUA; Transcription factor GAMYB
STRINGTRIUR3_22706-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123972632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.15e-52myb domain protein 101