PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_22525-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | E2F/DP | ||||||||
Protein Properties | Length: 601aa MW: 65647.6 Da PI: 6.5263 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 76.7 | 2.2e-24 | 330 | 389 | 7 | 71 |
E2F_TDP 7 rlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 +llt+kf++ll+++e+gi++ln++a++L +v ++RRiYDi+NVLe+++liek+ kn+irwkg TRIUR3_22525-P1 330 GLLTKKFINLLKQAEDGILDLNNAAETL---EV--QKRRIYDITNVLEGIGLIEKTLKNRIRWKG 389 589*************************...99..****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01372 | 5.2E-28 | 320 | 389 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 7.8E-25 | 330 | 391 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 8.9E-22 | 330 | 389 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 9.25E-16 | 330 | 390 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF144074 | 1.2E-28 | 405 | 496 | No hit | No description |
CDD | cd14660 | 1.71E-42 | 405 | 496 | No hit | No description |
Pfam | PF16421 | 6.5E-29 | 405 | 494 | IPR032198 | E2F transcription factor, CC-MB domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 601 aa Download sequence Send to blast |
MRRLPLLPLA PAALAPVVLA AILMRGLLSG RRIITQHRQL FWLSLLLNNS YAGYIQELCC 60 QLKRKATREE NNAAESSDCM IVTTGVTGNP LLTPVSGKAV KNSKSKTKNN KAGPQTPTPN 120 VDRRRWKTAA VTKHKLLESV GFTAGQGVSD NVQAAWPNRL ESLVEEELQA VVVGANGESV 180 TPQVMWSEVV NLDEEKLGAL VARDIRLITV VADVSRRRSA NSAGVRWRSA GGAGVADAGV 240 GAGAIQGAAT RVQGGCGCGA EEGARWCRSF ALAKAIPEWR SMAAEARRLG KGPQATLWLE 300 AIWVEVVGGQ DVPHGGLRAR SEVVLVWPAG LLTKKFINLL KQAEDGILDL NNAAETLEVQ 360 KRRIYDITNV LEGIGLIEKT LKNRIRWKGL DDSGVELDNG LSGLQEQALD ERISDMREKL 420 RGLTEDENSQ RWLYVTEDDI KGLPCFQNET LIAIKAPHGT TLEVPDPDEA GDYLQRRYRI 480 VLRSTLGPID VYLVSQFDDG FENLGGAATP PRHTNVPKPG PCEDLHATNA TQSSKSINVE 540 YNIQHRQNTP QDPSSSNDYG GMTRIIPSDV NTDADYWLLT EGDVSITDMW ETARILCLII 600 H |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_A | 1e-20 | 330 | 390 | 13 | 74 | PROTEIN (TRANSCRIPTION FACTOR E2F-4) |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ238590 | 0.0 | AJ238590.1 Triticum sp. mRNA for E2F protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020183252.1 | 0.0 | transcription factor E2FA-like isoform X2 | ||||
TrEMBL | M7ZCV2 | 0.0 | M7ZCV2_TRIUA; Transcription factor E2FB | ||||
STRING | TRIUR3_22525-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP625 | 37 | 148 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36010.1 | 5e-93 | E2F transcription factor 3 |