PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_22499-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

CAMTA

Protein Properties

Length: 930aa MW: 103487 Da PI: 7.6

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_22499-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	118.4	3.5e-37	212	294	35	117
CG-1 35 ksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylev 117 ++gs++L+nr++ r+fr+DGy w+kkk+gk+ +E+he LKv++v++l+cyYa++e+np f rr+yw+Le ++e+ivlvhy++v TRIUR3_22499-P1 212 NCGSWFLFNRRVHRFFRNDGYVWQKKKNGKSGNEAHEYLKVDNVKALNCYYARAENNPRFMRRIYWMLEPAYEHIVLVHYRDV 294 58******************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	58.143	189	300	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	4.7E-40	192	295	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	4.3E-31	196	294	IPR005559	CG-1 DNA-binding domain
CDD	cd00102	0.00374	469	532	No hit	No description
SuperFamily	SSF81296	1.89E-8	470	529	IPR014756	Immunoglobulin E-set
Pfam	PF13637	5.6E-9	612	663	No hit	No description
SuperFamily	SSF48403	3.42E-14	613	704	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.6E-14	614	707	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.379	615	675	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.84E-8	615	702	No hit	No description
PROSITE profile	PS50088	11.06	643	675	IPR002110	Ankyrin repeat
SMART	SM00248	0.0061	643	672	IPR002110	Ankyrin repeat
SMART	SM00015	6.6	800	822	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.013	823	845	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.468	824	852	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0046	825	845	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 930 aa Download sequence Send to blast
MTEGDDNDNR FRVGVGSGSG SAFGLDVWGR RWWDVKGSMD GVPRGRQSEV LLQVVPLRVL 60 LQPALLERLL QGRLERDLIQ QYSIQEVVPP TANTWGSSWR RPGHSRLTSV VPAGIFGALA 120 TPPAPVLAPS PEFVRPPRCS SSSGKVINAG FSRRLLLSTT VVPKFQYFPV SCAVSAADFG 180 YQAPGGHDIL NLQREVKTRW LKPREVLDIL QNCGSWFLFN RRVHRFFRND GYVWQKKKNG 240 KSGNEAHEYL KVDNVKALNC YYARAENNPR FMRRIYWMLE PAYEHIVLVH YRDVLEGSIS 300 VSVLNGSPTS NQNGSASRAD AHSSPGLTSE IVAPLLNSCS PGSAEEVSSQ IPTINNETND 360 ISLFDWRRTL EMQLSLENKE RHDVNTDEVL PNHDPIPAHG IQNEELDACI NLADVFDLGF 420 REDNHAEGSH PYPDPIDVLK YSETWLEDDQ LKSILHSAPV TIDENQWFHL HEVSPEWAFC 480 SESAKVVIVG DFPCNLSNSS WVLFGDVKVP AVVVQQGVIR CYTPPYLGAG KMLFDSHGCE 540 LFSKFRLPLP NARSGFPVNP SEIIGRTCEQ LDHENAVNCI MEVMLNNKFQ DWLSSKFEQN 600 SEGEYLLPKQ YHGVIHTIAA LGYDWALKPL LSNGVPINYR DANGWTALHW AARFGREQMV 660 AVLVVAGAAV GALSDPTAED PAAKTPASIA SAYGFIGISA FLSEAQLTST LDSLESKENG 720 KPVDHNGGVS TSSAVDRVSD KCAHVDGGTD DQLALKDSLG AIRNAVQAAG RIQATFRVFS 780 LKKKKQKALQ NGDSSASPSM LERATLSIQK NFRCWKKSKE YQKIRKNVIK IQARFRAHRE 840 RNKYKELLQS VGILEKIMLR WFRKGVGLRG INSRAMPIDQ DEEEDIVKVL ETAVSEAVSR 900 VSAIVGCPVA RLDYRRMLEM HQQAKIGHGK

Sequence ? help Back to Top

Protein Sequence Length: 930 aa Download sequence Send to blast

MTEGDDNDNR FRVGVGSGSG SAFGLDVWGR RWWDVKGSMD GVPRGRQSEV LLQVVPLRVL  60
LQPALLERLL QGRLERDLIQ QYSIQEVVPP TANTWGSSWR RPGHSRLTSV VPAGIFGALA  120
TPPAPVLAPS PEFVRPPRCS SSSGKVINAG FSRRLLLSTT VVPKFQYFPV SCAVSAADFG  180
YQAPGGHDIL NLQREVKTRW LKPREVLDIL QNCGSWFLFN RRVHRFFRND GYVWQKKKNG  240
KSGNEAHEYL KVDNVKALNC YYARAENNPR FMRRIYWMLE PAYEHIVLVH YRDVLEGSIS  300
VSVLNGSPTS NQNGSASRAD AHSSPGLTSE IVAPLLNSCS PGSAEEVSSQ IPTINNETND  360
ISLFDWRRTL EMQLSLENKE RHDVNTDEVL PNHDPIPAHG IQNEELDACI NLADVFDLGF  420
REDNHAEGSH PYPDPIDVLK YSETWLEDDQ LKSILHSAPV TIDENQWFHL HEVSPEWAFC  480
SESAKVVIVG DFPCNLSNSS WVLFGDVKVP AVVVQQGVIR CYTPPYLGAG KMLFDSHGCE  540
LFSKFRLPLP NARSGFPVNP SEIIGRTCEQ LDHENAVNCI MEVMLNNKFQ DWLSSKFEQN  600
SEGEYLLPKQ YHGVIHTIAA LGYDWALKPL LSNGVPINYR DANGWTALHW AARFGREQMV  660
AVLVVAGAAV GALSDPTAED PAAKTPASIA SAYGFIGISA FLSEAQLTST LDSLESKENG  720
KPVDHNGGVS TSSAVDRVSD KCAHVDGGTD DQLALKDSLG AIRNAVQAAG RIQATFRVFS  780
LKKKKQKALQ NGDSSASPSM LERATLSIQK NFRCWKKSKE YQKIRKNVIK IQARFRAHRE  840
RNKYKELLQS VGILEKIMLR WFRKGVGLRG INSRAMPIDQ DEEEDIVKVL ETAVSEAVSR  900
VSAIVGCPVA RLDYRRMLEM HQQAKIGHGK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC686696	0.0	KC686696.1 Triticum aestivum calmodulin-binding transcription activator 4 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002456865.1	0.0	calmodulin-binding transcription activator 4
TrEMBL	M8A0G8	0.0	M8A0G8_TRIUA; Calmodulin-binding transcription activator 6
STRING	TRIUR3_22499-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9407	34	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16940.1	3e-75	calmodulin binding;transcription regulators