PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_22385-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

CPP

Protein Properties

Length: 489aa MW: 53782.1 Da PI: 7.6285

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_22385-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	51.3	2.4e-16	83	121	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 k++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN TRIUR3_22385-P1 83 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNF 121 589***********************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51634	17.528	1	123	IPR005172	CRC domain
SMART	SM01114	2.4E-19	83	124	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	8.0E-13	86	121	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MPSPEPRDAP LTELVLDRWR PIRSAQRPAD SSPHISCKNA VEEDVVDGFL LLIAERTRIM 60 VREPPSCKPV GRPTPIPQRK PRKHNKGCHC KKSGCLKKYC ECFQANILCS ENCKCMDCKN 120 FDGSEDRKHL YLDHKNVIHM QQAANAAVNG AIGATALSSP STSRKRKHID SSLDLSTKEH 180 LAIRNGQLSQ VIYQKNAMAS DGSLPIGQSA HPHMMGPFKV TYRPLLADII QPGDVKELCK 240 LLVTVSGQAA KAYTGIAPGI VFSFHFSSRK IQEEKVAEKE DGVGGSLALT NHDREGKNKD 300 QNHRKISIDD HSSGGTDMGK ASLDDSRPDC TDDQKSSRPM SPGTLALMCD EQDAMFATSQ 360 NAVAPPAIDV DQNRSELYAE QERFGPDHFQ PAEEKYSMAI RSEVTGHPGQ CSDGEVLLSN 420 RHTKISLDET VPCTIICFLT PLARHATLMS DQFSSGILQH LCHKRLVCLG VTYFLTVVQN 480 SNAKGLFDS

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MPSPEPRDAP LTELVLDRWR PIRSAQRPAD SSPHISCKNA VEEDVVDGFL LLIAERTRIM  60
VREPPSCKPV GRPTPIPQRK PRKHNKGCHC KKSGCLKKYC ECFQANILCS ENCKCMDCKN  120
FDGSEDRKHL YLDHKNVIHM QQAANAAVNG AIGATALSSP STSRKRKHID SSLDLSTKEH  180
LAIRNGQLSQ VIYQKNAMAS DGSLPIGQSA HPHMMGPFKV TYRPLLADII QPGDVKELCK  240
LLVTVSGQAA KAYTGIAPGI VFSFHFSSRK IQEEKVAEKE DGVGGSLALT NHDREGKNKD  300
QNHRKISIDD HSSGGTDMGK ASLDDSRPDC TDDQKSSRPM SPGTLALMCD EQDAMFATSQ  360
NAVAPPAIDV DQNRSELYAE QERFGPDHFQ PAEEKYSMAI RSEVTGHPGQ CSDGEVLLSN  420
RHTKISLDET VPCTIICFLT PLARHATLMS DQFSSGILQH LCHKRLVCLG VTYFLTVVQN  480
SNAKGLFDS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	6e-14	82	130	82	130	Protein lin-54 homolog
5fd3_B	6e-14	82	130	82	130	Protein lin-54 homolog
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK373983	0.0	AK373983.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3049P08.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020168106.1	0.0	protein tesmin/TSO1-like CXC 5
TrEMBL	M7YIJ9	0.0	M7YIJ9_TRIUA; Uncharacterized protein
STRING	TRIUR3_22385-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4730	36	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	7e-54	Tesmin/TSO1-like CXC domain-containing protein