PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_22305-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Nin-like

Protein Properties

Length: 1033aa MW: 113248 Da PI: 5.1402

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_22305-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.6	3e-29	690	740	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ TRIUR3_22305-P1 690 EKNVSLKVLQQYFAGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKIKKV 740 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.177	675	760	IPR003035	RWP-RK domain
Pfam	PF02042	1.4E-25	692	740	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.6E-12	941	998	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.1E-11	945	998	No hit	No description
Pfam	PF00564	5.7E-7	948	998	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1033 aa Download sequence Send to blast
MVVGLGCTGV ASGVVTVSKW RGRTRDGAEA LGGGWTRDDA GGLGEGCPPE HTGRREDVVG 60 LDYEMLLDMA ERLTGDVCYV GADIFMDYEA PVMTSSISRC DVELVSWRKI SGDDGDRLVL 120 GVHAHSRSYL GIEILCVLVQ KDLILGGERS GMDENGTPDY SGGGSDMDLL MLSGFDDLDS 180 FPELGAGPSF SDGILSSFSV SPAQQVTHIS PSPPSVDAEE QGDVSITDGS DCSVSLASNE 240 VMNVSAPTVP KTVYGGVTLT EKMLRALAML KEASTAGPVL VQVWIPVRNG DHQVLTTSDQ 300 PFLLDERLTG YREVSRQFTF SATEGPGLFP GLPGRVFISG MPEWTSNVMY YNTSEFLRVD 360 YAIRNEVRGS LAMPVFNSSG GSCCAVLEVV MTQEKDNFCS EMDNLSNALQ SVQLSTVQAR 420 THPQSLTRNQ HSVLTEILDV LKAVCHTHML PLALAWIPVC PNSNLNVSAE YGDQAIKFGL 480 RNKDVLCVQE SACYINDMRM HDFLRACAEH PLEKGQGVAG NAILSNHPFF SSDVREYDMH 540 DYPLVHHARK FGLHAAVAIR LRSTYTGNDD YVLEFFLPLT CKVCEEQQLL LDDISMTMQR 600 VCSSLRTVSD AELKENTIIM RSAIRCSSSD VSINSCDQID VSSEVKKYAK FEPGSTSENF 660 QNCSSTGKNV SLTVLQESTS DRLKIRSSTE KNVSLKVLQQ YFAGSLKDAA KSIGVCPTTL 720 KRICRQHGIS RWPSRKIKKV NRSLQKIQNV ISTVHGVEGE IKYDPATGCI VSSVSHTEES 780 SMMMNVEHQS SDSLPIECHK FQPDYDAYQR EHLGQAVLHK AQNDKRSETH INLNPGGSCR 840 NSNFGRTSKG PRCQDASNSS YLTKEMISAD GTDMWVEGAE QKNVVWNSIS MPQQCKIEIE 900 TDKSNTIVEQ SLASSSSMTD CSSGGTSSDG TLKKCFKSRS VDGSNASIVV KAAYKDDTVR 960 LKLLPSMKYE NLLEEIAKRL KLSVGAFQLK YKDDEDEWGV QQCSYFFGRE ENEFLSSTYS 1020 RFCLSGTIVY SGS

Sequence ? help Back to Top

Protein Sequence Length: 1033 aa Download sequence Send to blast

MVVGLGCTGV ASGVVTVSKW RGRTRDGAEA LGGGWTRDDA GGLGEGCPPE HTGRREDVVG  60
LDYEMLLDMA ERLTGDVCYV GADIFMDYEA PVMTSSISRC DVELVSWRKI SGDDGDRLVL  120
GVHAHSRSYL GIEILCVLVQ KDLILGGERS GMDENGTPDY SGGGSDMDLL MLSGFDDLDS  180
FPELGAGPSF SDGILSSFSV SPAQQVTHIS PSPPSVDAEE QGDVSITDGS DCSVSLASNE  240
VMNVSAPTVP KTVYGGVTLT EKMLRALAML KEASTAGPVL VQVWIPVRNG DHQVLTTSDQ  300
PFLLDERLTG YREVSRQFTF SATEGPGLFP GLPGRVFISG MPEWTSNVMY YNTSEFLRVD  360
YAIRNEVRGS LAMPVFNSSG GSCCAVLEVV MTQEKDNFCS EMDNLSNALQ SVQLSTVQAR  420
THPQSLTRNQ HSVLTEILDV LKAVCHTHML PLALAWIPVC PNSNLNVSAE YGDQAIKFGL  480
RNKDVLCVQE SACYINDMRM HDFLRACAEH PLEKGQGVAG NAILSNHPFF SSDVREYDMH  540
DYPLVHHARK FGLHAAVAIR LRSTYTGNDD YVLEFFLPLT CKVCEEQQLL LDDISMTMQR  600
VCSSLRTVSD AELKENTIIM RSAIRCSSSD VSINSCDQID VSSEVKKYAK FEPGSTSENF  660
QNCSSTGKNV SLTVLQESTS DRLKIRSSTE KNVSLKVLQQ YFAGSLKDAA KSIGVCPTTL  720
KRICRQHGIS RWPSRKIKKV NRSLQKIQNV ISTVHGVEGE IKYDPATGCI VSSVSHTEES  780
SMMMNVEHQS SDSLPIECHK FQPDYDAYQR EHLGQAVLHK AQNDKRSETH INLNPGGSCR  840
NSNFGRTSKG PRCQDASNSS YLTKEMISAD GTDMWVEGAE QKNVVWNSIS MPQQCKIEIE  900
TDKSNTIVEQ SLASSSSMTD CSSGGTSSDG TLKKCFKSRS VDGSNASIVV KAAYKDDTVR  960
LKLLPSMKYE NLLEEIAKRL KLSVGAFQLK YKDDEDEWGV QQCSYFFGRE ENEFLSSTYS  1020
RFCLSGTIVY SGS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK249277	0.0	AK249277.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf33g13, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020152944.1	0.0	protein NLP2-like
TrEMBL	M7Z5K9	0.0	M7Z5K9_TRIUA; Protein NLP2
STRING	TRIUR3_22305-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3670	35	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	0.0	Nin-like family protein