PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_22279-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | E2F/DP | ||||||||
Protein Properties | Length: 239aa MW: 27552.4 Da PI: 10.6273 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 52.3 | 9.4e-17 | 63 | 118 | 23 | 71 |
E2F_TDP 23 givtlnevakeLvse........dvknkrRRiYDilNVLealnliekkekneirwkg 71 +++ l++v+++ ++ d+kn+rRR+YD++NVL al++i+k ek+eirw+g TRIUR3_22279-P1 63 TTTPLSQVCEKVEAKgrttynefDEKNIRRRVYDAFNVLIALRVIAK-EKKEIRWMG 118 55666666666633366677667999*********************.*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01372 | 1.4E-14 | 47 | 118 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 1.1E-13 | 60 | 118 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.18E-11 | 69 | 119 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 7.1E-18 | 84 | 123 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
CDD | cd14458 | 3.63E-27 | 123 | 222 | IPR014889 | Transcription factor DP, C-terminal |
SMART | SM01138 | 8.9E-25 | 125 | 238 | IPR014889 | Transcription factor DP, C-terminal |
SuperFamily | SSF144074 | 4.45E-32 | 125 | 235 | No hit | No description |
Pfam | PF08781 | 2.2E-23 | 126 | 223 | IPR014889 | Transcription factor DP, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MTRTIWLPGR GQQAWPPHHA AAHPNIATAV RRHQLGINFN CKQLSGNTNE NIRHTTSRAE 60 ASTTTPLSQV CEKVEAKGRT TYNEFDEKNI RRRVYDAFNV LIALRVIAKE KKEIRWMGLS 120 NYRYEKIKKL EEVRKELVNK IRNKKALLQE IEKQFDDLQN IKLRNQTLES SAENVNGIRL 180 PFVLVKTSRK ARVEIEISDD SKFAHFEFNG APFTLHDDLS ILEGVRRNSI GRAGRATLH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 3e-16 | 69 | 119 | 18 | 89 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ271917 | 0.0 | AJ271917.1 Triticum sp. mRNA for DP protein (dp gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020151361.1 | 1e-112 | transcription factor-like protein DPB | ||||
Swissprot | Q9FNY2 | 8e-46 | DPB_ARATH; Transcription factor-like protein DPB | ||||
TrEMBL | M8ABY6 | 1e-177 | M8ABY6_TRIUA; Transcription factor-like protein DPB | ||||
STRING | TRIUR3_22279-P1 | 1e-178 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1283 | 38 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03415.1 | 3e-48 | Transcription factor DP |