PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_22240-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Trihelix
Protein Properties Length: 373aa    MW: 40389.1 Da    PI: 9.0725
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_22240-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix39.81.2e-123741786
         trihelix 17 meerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                     + e+l+rg+l++ +We+v++++     +    +s +qCk+k++nl+kryk + ++  +  s s s +p+++q+e
  TRIUR3_22240-P1  3 RFEQLNRGNLRGRDWEDVAAAVtdgqGKSSGGKSVEQCKNKIDNLKKRYKVECQRIAG--SASASLWPWYKQME 74
                     568999****************6655344446899***************88888877..467779*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.1E-14576No hitNo description
Gene3DG3DSA:3.40.1160.103.1E-70128366IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536331.7E-51131366IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B32.54131367IPR015963Uridylate kinase, bacteria
PfamPF006962.3E-16134346IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042541.22E-110134367No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0046939Biological Processnucleotide phosphorylation
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MDRFEQLNRG NLRGRDWEDV AAAVTDGQGK SSGGKSVEQC KNKIDNLKKR YKVECQRIAG  60
SASASLWPWY KQMEQIMGNS PSPGTPKPPP ATNDDKPRQQ QQHSNKRYPS SGTGHATTMV  120
PYSRSTPLSN PKWKRVLLKI GGTALAGEAP HNVDPKVIML IAREVQVACR HGVEVAILMG  180
GRNVFCADSW VAATGTDRAS THPIGMMAAV MNAVLLQASL EKIGVETRVQ TALMMQEVAE  240
PYIRRRAIRH LEKGRVVIFG GTGAGTGNPL FTTDTAAALR ASEINADVVL KGVIGDDEYG  300
CPPRSNGSAP FEHISYRELA ARGTSKMDMT AITCCEENNI PVVIFNMLEP GNMSRAICGD  360
QVGTLVDQSG RIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A1e-641253661239Uridylate kinase
3ek5_B1e-641253661239Uridylate kinase
3ek5_C1e-641253661239Uridylate kinase
3ek5_D1e-641253661239Uridylate kinase
3ek5_E1e-641253661239Uridylate kinase
3ek5_F1e-641253661239Uridylate kinase
3ek6_A1e-641253661239Uridylate kinase
3ek6_B1e-641253661239Uridylate kinase
3ek6_C1e-641253661239Uridylate kinase
3ek6_D1e-641253661239Uridylate kinase
3ek6_E1e-641253661239Uridylate kinase
3ek6_F1e-641253661239Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3699350.0AK369935.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2101G10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159183.10.0uncharacterized protein LOC109744472
TrEMBLM7YG010.0M7YG01_TRIUA; Uridylate kinase
STRINGTRIUR3_22240-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19353442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-139Trihelix family protein