PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_22144-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family DBB
Protein Properties Length: 267aa    MW: 29644.3 Da    PI: 6.7078
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_22144-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.16.6e-07333434
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                     ++C+ +e+  + lfC  ++  lC+ C ++ H
  TRIUR3_22144-P1  3 TICDVCESAVAVLFCAADEAALCRPCDEKVH 33
                     68**************************998 PP
2zf-B_box24.55.6e-085291237
         zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                     +  +C+ +e+ ++ ++C  +++ lC +C ++ H g    H
  TRIUR3_22144-P1 52 KLVRCDICESSPAFFYCDIDGTSLCLSCDMAVHVGgkrtH 91
                     6789***************************996545555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003367.1E-9147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.04147IPR000315B-box-type zinc finger
PfamPF006434.2E-5334IPR000315B-box-type zinc finger
CDDcd000213.11E-7345No hitNo description
PROSITE profilePS501199.6415196IPR000315B-box-type zinc finger
SMARTSM003361.3E-105196IPR000315B-box-type zinc finger
PfamPF006438.8E-65291IPR000315B-box-type zinc finger
CDDcd000213.55E-65484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MRTICDVCES AVAVLFCAAD EAALCRPCDE KVHMCNKLAS RHVRVGLADP NKLVRCDICE  60
SSPAFFYCDI DGTSLCLSCD MAVHVGGKRT HGRYLLLRQR VEFPGDKPGH MDDVAMQQME  120
SENPRDQNNA HSVEKEQMVN HHHNAYDPAS DGNCNGQGAI DSKMFDLNMR PARNNGQGSS  180
SQASSTEIYS NLRKRWQLCL AIVQTSERDI CHTSFRQVNW FKQLIPPASQ PQYEICHKGT  240
SNPKPDTVSA CGPGDQFTDT NKPAIQP
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3741330.0AK374133.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3055F19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148445.11e-132B-box zinc finger protein 18-like
SwissprotC0SVM53e-66BBX19_ARATH; B-box zinc finger protein 19
TrEMBLT1MVX90.0T1MVX9_TRIUA; Uncharacterized protein
STRINGTRIUR3_22144-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103342225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.12e-68DBB family protein