PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_22131-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 332aa MW: 36426.3 Da PI: 6.621 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.6 | 2.1e-52 | 3 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrF+Ptd+elv++yLk++v++ k+el evi+ +d+yk+ePw+Lp k + +++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd++v TRIUR3_22131-P1 3 LPPGFRFRPTDDELVSYYLKRRVDNLKIEL-EVIPVIDLYKCEPWELPeKsFLPKRDLEWFFFVPRDRKYPNGSRTNRATTTGYWKATGKDRKV 95 79****************************.99**************95334445667************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +g++ g++ktLvfykgrap ge+tdWvmheyrl TRIUR3_22131-P1 96 SCDGGAVCGVRKTLVFYKGRAPGGERTDWVMHEYRL 131 **********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.4E-59 | 2 | 153 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.848 | 3 | 154 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.3E-28 | 4 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0071365 | Biological Process | cellular response to auxin stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MTLPPGFRFR PTDDELVSYY LKRRVDNLKI ELEVIPVIDL YKCEPWELPE KSFLPKRDLE 60 WFFFVPRDRK YPNGSRTNRA TTTGYWKATG KDRKVSCDGG AVCGVRKTLV FYKGRAPGGE 120 RTDWVMHEYR LCQDLLHGAS NFIGAYALCR VIKRTEAGLL HGDAAAKARP GHRQMSKVGS 180 SSSLVTTDQQ LGSLTPSPPR LDIVGNAFQL HSSPSPLYGG GGEVVSGMGT PLGFPQQDAA 240 ATFFIDGDLA GAGETTQSHM PFFGDMGVVS DHELRWDTLP PCANSTFSTT AGAMELWNPA 300 APNAAAPMLC REASDDLAAF FSSLDENNMV VY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-50 | 1 | 158 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-50 | 1 | 158 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-50 | 1 | 158 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-50 | 1 | 158 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-50 | 1 | 158 | 15 | 169 | NAC domain-containing protein 19 |
4dul_B | 2e-50 | 1 | 158 | 15 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00439 | DAP | Transfer from AT4G17980 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK368985 | 0.0 | AK368985.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2083F05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020161029.1 | 0.0 | NAC domain-containing protein 86-like | ||||
TrEMBL | M7YE72 | 0.0 | M7YE72_TRIUA; NAC domain-containing protein 78 | ||||
STRING | TRIUR3_22131-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6209 | 38 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17980.1 | 3e-78 | NAC domain containing protein 71 |