PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_22120-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 991aa    MW: 112493 Da    PI: 9.1946
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_22120-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.61.2e-142623401398
                      TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      ++ + +p kf+++++g+   s  ++le ++g+ ++v+    k  +++vl++GW  Fv+  +Lk+g f+vF+++g+s f  +v +f+
  TRIUR3_22120-P1 262 KC-MAIPQKFVQNFKGQ--ISEVIKLEAPDGNIYNVQA--IKDLNKIVLGSGWGVFVRFYELKAGHFLVFRYIGDSHF--KVLIFD 340
                      45.99******888888..7779***************..999999****************************9999..887775 PP
2B348.61.4e-154204991499
                      T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      + + +p kf++++ g    sk ++le ++g+++++++  ++  ++++lt+GW  F++a +Lke D +vF+++g+s f  +v +f+ 
  TRIUR3_22120-P1 420 HEMNIPEKFVNNFRGR--ISKVMKLEAPDGNVYNIQV--TNDLNKITLTSGWAAFASAYELKEHDLLVFSYTGNSHF--KVLIFDP 499
                      6799******888766..7899***************..**********************************9999..9999885 PP
3B335.81.4e-116247041394
                      TT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
               B3  13 sgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                      sg lv+ k++a+++     e++ +tl + ++++ W  +l+++  + + +l++GW++F+  n+L+e D++vF+++++  e ++vv
  TRIUR3_22120-P1 624 SGSLVICKDYAAKYLPH--EDQFITLCHpRKSNIWLDNLKVTTDG-SGMLSAGWSSFALHNELRESDVCVFEVSKSaGEMTMVV 704
                      467***********423..344677777477799*9999654444.458***********************887544444444 PP
4B348.21.9e-157858721199
                      HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
               B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                       k+++l++p kfa++h ++++++  l l+  ++++W  ++ y   ++++   + W +Fv++n+L+ g ++vF+l++  s+ ++ v+vf k
  TRIUR3_22120-P1 785 IKNNLLTFPEKFAAKH-LVERSHDILLLRPNRSETWCARYYYHPEKQGFN-YSSWTKFVRDNKLRKGHVCVFELMKGvSKVTMIVHVFTK 872
                      6899***********9.4555555566666889*******9988888864.569*********************888********9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.83E-19254344IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-17259340IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-17259340No hitNo description
SMARTSM010191.0E-7260342IPR003340B3 DNA binding domain
PfamPF023621.2E-12263339IPR003340B3 DNA binding domain
PROSITE profilePS5086310.546264342IPR003340B3 DNA binding domain
SuperFamilySSF1019364.32E-21403502IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-19404502IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.646407500IPR003340B3 DNA binding domain
CDDcd100174.46E-17408498No hitNo description
SMARTSM010195.0E-7410500IPR003340B3 DNA binding domain
PfamPF023626.0E-13420498IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-16609705IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-17611707IPR015300DNA-binding pseudobarrel domain
CDDcd100178.15E-10612706No hitNo description
PROSITE profilePS5086310.941612708IPR003340B3 DNA binding domain
SMARTSM010190.0019615708IPR003340B3 DNA binding domain
PfamPF023624.6E-9621705IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-15767871IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-15770871IPR015300DNA-binding pseudobarrel domain
SMARTSM010199.9E-6774872IPR003340B3 DNA binding domain
PROSITE profilePS5086311.42775873IPR003340B3 DNA binding domain
PfamPF023627.0E-14784872IPR003340B3 DNA binding domain
CDDcd100172.27E-12790870No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 991 aa     Download sequence    Send to blast
MGSQKNPASL GANSRTGQRR SRRRQRATEA ATAWAHTARR KATRAVGAVE PAYATRQRGK  60
TRAEALQRSQ DSPEQGSTAT GSADGAGLAN ACKRGREGHE AAQGLTMSTR VEKYFKFELG  120
SNLKHFYRNQ TNSNLGENLT ERYRRIGFNP DMMALQELGP LVSAGMVCIC IYVCPLALGL  180
AIVGILAASL PKYWWFLAKA DVSCSLDSPA FLVIFIMALD QDHEQGNRSG HRISSKSFQR  240
CEGCDAHYYW CHMDDTQKYF FKCMAIPQKF VQNFKGQISE VIKLEAPDGN IYNVQAIKDL  300
NKIVLGSGWG VFVRFYELKA GHFLVFRYIG DSHFKVLIFD FASCCEKEVF HVLMNCGPNA  360
QEKDTRLDRS LLGERRCQNG GSSNSESHRR CEHCDVHLYW HHMDDRQKHF LRFMVGDFLH  420
EMNIPEKFVN NFRGRISKVM KLEAPDGNVY NIQVTNDLNK ITLTSGWAAF ASAYELKEHD  480
LLVFSYTGNS HFKVLIFDPS GCEKELFRIV MNHTPNVQKR GISHDQIFLK ETRRRDGGSR  540
DNNPRKTKKV TPLDSPSPKS AEGLTSPENT MNSGGPPETS EPRYVLATGC NLTTAQKGQI  600
DALVKKVRPV IPFYITAMNK TSISGSLVIC KDYAAKYLPH EDQFITLCHP RKSNIWLDNL  660
KVTTDGSGML SAGWSSFALH NELRESDVCV FEVSKSAGEM TMVVHSLEGG HHLQGKNKCD  720
YPVKGKAIKE AESDHKHDES KSNYYYSKYA KGLSGEELEE IFRSALIQRG NVVYVTILGK  780
NQVRIKNNLL TFPEKFAAKH LVERSHDILL LRPNRSETWC ARYYYHPEKQ GFNYSSWTKF  840
VRDNKLRKGH VCVFELMKGV SKVTMIVHVF TKVDGRTERE EYFSACSTYS YSTEVFFNLQ  900
KSAMAYADAC VWESSDSFST HKFNERHACF FLRFCKTYRV SQFQKFVSQR NLILLASTWY  960
SMEVSDYHAN LVIHSPSNQE SKTVIAMFLK S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3571060.0AK357106.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1046E05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168823.10.0B3 domain-containing protein LOC_Os12g40080-like
TrEMBLT1MVV50.0T1MVV5_TRIUA; Uncharacterized protein
STRINGTRIUR3_22120-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-17B3 family protein