PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_21992-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 398aa MW: 44479.4 Da PI: 4.6985 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 108.6 | 7.2e-34 | 12 | 151 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sgy 82 lp+G++F+P+d+el+ + L+k+ ++ + ++++ +ke+ +i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r+++ + + TRIUR3_21992-P1 12 LPKGVKFDPSDQELLGHLLAKHDKAGSqphpfIDEFIPtVKEAdGICYTHPQKLP-GVKQDGSVSHFFHRTFKAYNTGTRKRRKINtsdlaDVR 104 799************999987655444456553333334777756**********.677888899******************75444555889 PP NAM 83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 W++tgk+k+v++ +g++ g+kk++v+y + + k++kt+Wvmh+y+l TRIUR3_21992-P1 105 WHKTGKTKPVMV-DGQHLGCKKIMVLYmsTVKGGKPKKTNWVMHQYHL 151 ************.999***********6644666777*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.12E-36 | 5 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.552 | 12 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.5E-15 | 13 | 151 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MPSKVVHQWP GLPKGVKFDP SDQELLGHLL AKHDKAGSQP HPFIDEFIPT VKEADGICYT 60 HPQKLPGVKQ DGSVSHFFHR TFKAYNTGTR KRRKINTSDL ADVRWHKTGK TKPVMVDGQH 120 LGCKKIMVLY MSTVKGGKPK KTNWVMHQYH LGTGEDEQNG EYVVSKLFFQ QQNGEKSALE 180 LTNTDVMQTT VAEADLTDLP EPTAEEEDER ISSISNQEFL LNNEYNADEE ALHSHEHNTY 240 QENGDCEIKM EEKAADENAV YPSSEKPEDG DNPPSQDPNL WEGDSQFLLD SQQLAENLAI 300 CDEFLQSQTS CGDGDEPGSI KPRLAVYAQL PVEDLKKDLQ EYKDLGPSDN ANLEPENNAE 360 LRLSQLFSLS TLGLLIRALL AGIFTGQLYD GNFHRAGG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP729147 | 1e-107 | KP729147.1 Stipa purpurea microsatellite ZH4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020160968.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1-like isoform X1 | ||||
Swissprot | Q6NQK2 | 1e-101 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | M8A126 | 0.0 | M8A126_TRIUA; NAC domain-containing protein 8 | ||||
STRING | TRIUR3_21992-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6785 | 36 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-100 | NAC family protein |