PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_21532-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GRAS | ||||||||
Protein Properties | Length: 893aa MW: 98916.7 Da PI: 6.3404 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 324.4 | 2.3e-99 | 417 | 790 | 1 | 371 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l++ L++cA+av++gd++ ++lL ++++++sp+gd++qRla +f+e+L+arla+++s++y++l +++ts + e l a+kl+ +s + k+ TRIUR3_21532-P1 417 LRTMLIHCAQAVATGDHRGSNELLRQIKQHSSPKGDATQRLAYCFAEGLEARLAGTGSHVYRSLVAKSTS---VGEFLRAYKLYMAASSFRKVN 507 5789***************************************************************999...9******************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 ++ + I++a+ g++r+Hi+D+++++G+QWp Llq La+R++gpp++RiTg++ p++g + ++eetg+rL+k A+e+gvpf+++ + +l TRIUR3_21532-P1 508 FIFVGKIIMDAMVGKSRLHIVDYNVEYGFQWPDLLQMLAEREGGPPEVRITGIDVPQPGfrPAFQIEETGRRLSKCAQEFGVPFRYHG-IPAKL 600 **********************************************************999***************************.799** PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsles.....erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275 e+++ e+L+++p+E+l+V ++ +l+desv ++ +rd vL +++++P+v++ + + ++++ F++rf eal +ysa fd+l+a++ TRIUR3_21532-P1 601 ETVHAEDLNIDPDEVLIVTSQCGFSNLMDESVIMDRqdipsPRDMVLTNIRNMRPDVFIDCVVNGTYSAPFFVTRFREALFTYSAQFDMLDATI 694 ****************************99887665555669**************************************************** PP GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369 pr++++r +Er ++g+ + nv+acega+r+ r et+++W+ r ++aG+++vpls+ ++k +k ++ + + + ++ ++ +l++gWk+r L++ TRIUR3_21532-P1 695 PRDNDDRLLIERDIFGPCALNVIACEGADRVDRPETYKQWQVRGHRAGLRQVPLSSAVVKLVKDKVKSLYHKDFLIDVDNRWLLQGWKGRMLFF 788 **********************************************************************888********************* PP GRAS 370 vS 371 +S TRIUR3_21532-P1 789 TS 790 99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 59.017 | 391 | 773 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.9E-97 | 417 | 790 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 893 aa Download sequence Send to blast |
MAATPDEFLR AGDAEPFSPS LFLDLPPTPS PPRAPASDDL DFISRMLMEE DIDDRFFYQY 60 PDHPAILSAQ HRFAQIISDS NTNPSTDDSA VASSTFSSDS ATARSASSCS DSATNTAKST 120 SSSHSATTNT ANSTSCSPSP GGFGPANPTW PYERIDLSQP LHSPPYIGLG FPVDGANNLL 180 FSGVSTPTSG YFGHTPALSR GNSNHFVAPA GQNGRSTGIQ SFATFSNSSA TKDAKTLSNN 240 ATAKAAKPAT QAACRGGPGT PASAFFFTGQ TDGDMDMLNM AFRKGMEEAN KFLPTNNTLD 300 AISNRPALRD FTCDQLKKEE ADRLRMLMFS NGRGRKNRHG VEDLEAEAGR RSKLMMPEQE 360 ESGVGEMVEE IMLHGHDIIM KGIEDLHIAM GTEAEKNHRK GTGKAARGRR GATEVDLRTM 420 LIHCAQAVAT GDHRGSNELL RQIKQHSSPK GDATQRLAYC FAEGLEARLA GTGSHVYRSL 480 VAKSTSVGEF LRAYKLYMAA SSFRKVNFIF VGKIIMDAMV GKSRLHIVDY NVEYGFQWPD 540 LLQMLAEREG GPPEVRITGI DVPQPGFRPA FQIEETGRRL SKCAQEFGVP FRYHGIPAKL 600 ETVHAEDLNI DPDEVLIVTS QCGFSNLMDE SVIMDRQDIP SPRDMVLTNI RNMRPDVFID 660 CVVNGTYSAP FFVTRFREAL FTYSAQFDML DATIPRDNDD RLLIERDIFG PCALNVIACE 720 GADRVDRPET YKQWQVRGHR AGLRQVPLSS AVVKLVKDKV KSLYHKDFLI DVDNRWLLQG 780 WKGRMLFFTS FQSADKEVSV VSSNFFVEVP ESKLSVSGVI KLKLMVIWSE REYSAGFLIQ 840 NQRMLLSGFC FHYLFEEDTK RGEKMLLHHM KLTQMMTCEE IRDDIIFYPS SQQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-36 | 423 | 790 | 25 | 376 | Protein SCARECROW |
5b3h_A | 2e-36 | 423 | 790 | 24 | 375 | Protein SCARECROW |
5b3h_D | 2e-36 | 423 | 790 | 24 | 375 | Protein SCARECROW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK364983 | 0.0 | AK364983.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2030A10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020172213.1 | 0.0 | scarecrow-like protein 34 | ||||
TrEMBL | M7YIT2 | 0.0 | M7YIT2_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_21532-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-134 | GRAS family protein |