PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_21510-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 725aa    MW: 78831.1 Da    PI: 7.0253
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_21510-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.75.5e-2047101256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        R+++t eq+++Le++F++ ++p++++r eL++++gL+ +qV++WFqNrR   k
  TRIUR3_21510-P1  47 HFRRRHTVEQIQILEAAFKEGHHPDEKRRLELSRRTGLSPAQVQIWFQNRRNSGK 101
                      5699***********************************************7655 PP
2START101.11.9e-322234455205
                      HHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
            START   5 eaaqelvkkalaeepgWvkss....esengdevlqkfeeskv....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                      +a++e+  ++++++p+W++      e  n++e+l+   +++     +  +  r +g+  +++++lv +l++    W++t++    +a+t +vi+
  TRIUR3_21510-P1 223 CAMEEFKVLVGLGAPVWSLAEggevEVINYKEYLKMMFPNEQhemeFGADGTRKTGIISCTATDLVGILMNAD-WWSQTFPgivaSATTSKVIT 315
                      7899999999***********988877788888888777666789999999**********************.******************** PP

                      TT....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.......-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
            START  87 sg....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe......sssvvRaellpSgiliepksnghskvtwveh 169
                      +g    g +qlm+ael +lsp vp R+  f+R++++  +  w++vdvSvd  +++         s +  ++l pSg+ i+++sngh++vtw+ +
  TRIUR3_21510-P1 316 PGdsgdGMVQLMNAELRVLSPRVPvRKINFIRHCQKIAENIWAVVDVSVDGIRDQAAglndgaPSTYTACKLQPSGCHIQELSNGHCQVTWIVN 409
                      *************************************************988887666666767899*************************** PP

                      EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
            START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                      +  ++++++ l ++l +sg a ga +w a lqr ce
  TRIUR3_21510-P1 410 MVHDEATVPPLHHPLFRSGWALGACRWIASLQRRCE 445
                      *********************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-193397IPR009057Homeodomain-like
SuperFamilySSF466893.72E-1938101IPR009057Homeodomain-like
PROSITE profilePS5007117.32943103IPR001356Homeobox domain
SMARTSM003892.5E-1945107IPR001356Homeobox domain
CDDcd000867.90E-194697No hitNo description
PfamPF000461.8E-1747101IPR001356Homeobox domain
PROSITE patternPS00027078101IPR017970Homeobox, conserved site
PROSITE profilePS5084827.054210449IPR002913START domain
SMARTSM002346.0E-11218446IPR002913START domain
CDDcd088753.00E-71222445No hitNo description
PfamPF018525.3E-26223445IPR002913START domain
SuperFamilySSF559616.77E-19224446No hitNo description
SuperFamilySSF559618.25E-8517699No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    Send to blast
HNLGAEVNGL PGAAANMGNN TNAAAADQGN GGGQANGDQT AGTRERHFRR RHTVEQIQIL  60
EAAFKEGHHP DEKRRLELSR RTGLSPAQVQ IWFQNRRNSG KSKAQKKETE EFQQENDRLQ  120
AEKQALMSAM QNKICIICRG EDTPERERLY AENMMLKDAH MRIADFLKNV SGGRLQVINH  180
TVVDTHAPLT LTGPNPVTIP DHGIARDNPE TDGNALAIQH VACAMEEFKV LVGLGAPVWS  240
LAEGGEVEVI NYKEYLKMMF PNEQHEMEFG ADGTRKTGII SCTATDLVGI LMNADWWSQT  300
FPGIVASATT SKVITPGDSG DGMVQLMNAE LRVLSPRVPV RKINFIRHCQ KIAENIWAVV  360
DVSVDGIRDQ AAGLNDGAPS TYTACKLQPS GCHIQELSNG HCQVTWIVNM VHDEATVPPL  420
HHPLFRSGWA LGACRWIASL QRRCEYIASL HTNPVHTLNN RSAAITAEGR KNVLEVAHRM  480
TLKFYEAICG PGSQPGRSVD ERRGSCGVGT ERYEVAVRVV TFPVGRGVAV LRATTTVWLP  540
RTPAQRVFNY LCDADRRTEW DISAKRTSTI RQEGCFSTGE VHGNSVSLLR TIASNGAYGK  600
LILQESSIDA SCMVLAYAPI DDQSVEEVMN GTNTSFSLLP SGVVVLPDGN AEPGAPPTSA  660
MCSSSSSSSH RSNSGSLVST MYQTLLSGQP PEHLFKAVAE NVGNLLCQAI DKIKSGVHAN  720
VVLSA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194819.10.0homeobox-leucine zipper protein ROC6-like
TrEMBLT1MU770.0T1MU77_TRIUA; Uncharacterized protein
STRINGTRIUR3_21510-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83241742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.11e-115homeodomain GLABROUS 1