PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_21467-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 392aa MW: 41774.6 Da PI: 5.4134 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 157.1 | 7.3e-49 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppG+rFhPtd el +yLk+k+ gkkl + ++++evdiyk+ PwdLp k ++ +++ +wyfF++r +ky+ g+r+nr+t+ gyWkatgkd++v TRIUR3_21467-P1 6 LPPGYRFHPTDVELTLYYLKRKLLGKKLLC-NAVAEVDIYKHAPWDLPaKsSMPTGDLQWYFFCTRGRKYSVGHRANRSTEGGYWKATGKDRQV 98 79*************************999.88***************4246666888************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++++vg+k+tLvf++g+apkg++tdWvm eyrl TRIUR3_21467-P1 99 VY-ENRTVGMKRTLVFHSGKAPKGTRTDWVMYEYRL 133 **.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-58 | 2 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.183 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.3E-25 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MEMPPLPPGY RFHPTDVELT LYYLKRKLLG KKLLCNAVAE VDIYKHAPWD LPAKSSMPTG 60 DLQWYFFCTR GRKYSVGHRA NRSTEGGYWK ATGKDRQVVY ENRTVGMKRT LVFHSGKAPK 120 GTRTDWVMYE YRLVQGEIPD AGVRLDDSVL CKVHKKSGPG PKIGEQYGAP FEEQEEELND 180 ANGDASCLSP AAPHSAPGPS HGGVLNSAGQ QLSNGGGVSL SLLAANNGGT SGARPDRASH 240 PDVNWDSIHV EQLADIIGRL STNPEGQHGP SSDLTTANQD SETIFDITGQ VIPCSLESSL 300 CKQCDECGVR LADPLLEPAA GEPYMELNDL LSRCHAARQV ADGSSSQVVV VSNGEGPVLD 360 LELKLGVESS DSVGQSSGAV SAAASGSGAP SS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-48 | 6 | 162 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-48 | 6 | 162 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-48 | 6 | 162 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-48 | 6 | 162 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-48 | 6 | 162 | 20 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-48 | 6 | 162 | 20 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-48 | 6 | 162 | 20 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-48 | 6 | 162 | 20 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-48 | 6 | 162 | 20 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-48 | 6 | 162 | 20 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-48 | 6 | 162 | 20 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-48 | 6 | 162 | 20 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-48 | 6 | 162 | 17 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-48 | 6 | 162 | 17 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK370777 | 0.0 | AK370777.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2116L22. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020181654.1 | 0.0 | NAC domain-containing protein 82-like | ||||
Refseq | XP_020181655.1 | 0.0 | NAC domain-containing protein 82-like | ||||
TrEMBL | M7YT45 | 0.0 | M7YT45_TRIUA; NAC domain-containing protein 78 | ||||
STRING | TRIUR3_21467-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14856 | 17 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64060.1 | 1e-57 | NAC domain containing protein 103 |