PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_21241-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 440aa    MW: 49196 Da    PI: 10.296
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_21241-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.54.2e-154899148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmg...kgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+d+++ +G+g +W + + +     ++R++k+c++rw++yl
  TRIUR3_21241-P1 48 KGPWSPEEDRKLKDYIHTHGTGgNWIALPTKADdsgLKRCGKSCRLRWLNYL 99
                     79************************************************97 PP

2Myb_DNA-binding37.74.6e-12106148246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++eEd  +  +++  G++ W+ Ia+ ++ gRt++++k++w++
  TRIUR3_21241-P1 106 GDFSEEEDRVICALFAAIGSR-WSIIAAQLP-GRTDNDVKNYWNT 148
                      689******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.4244399IPR017930Myb domain
SuperFamilySSF466891.09E-2645146IPR009057Homeodomain-like
SMARTSM007172.9E-1147101IPR001005SANT/Myb domain
PfamPF002496.4E-144899IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-2349106IPR009057Homeodomain-like
CDDcd001672.99E-85099No hitNo description
PROSITE profilePS5129422.656100154IPR017930Myb domain
SMARTSM007171.1E-11104152IPR001005SANT/Myb domain
PfamPF002491.6E-10106148IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-22107153IPR009057Homeodomain-like
CDDcd001673.30E-7108148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MAIDIRCETC SNNIVVERVL SKALVRIAVL AFSLQRRSSM AQKIRVKKGP WSPEEDRKLK  60
DYIHTHGTGG NWIALPTKAD DSGLKRCGKS CRLRWLNYLR PNIKHGDFSE EEDRVICALF  120
AAIGSRWSII AAQLPGRTDN DVKNYWNTKL KKKQLHLLIA AAAQSTHGQQ YSSRPPAPPF  180
TVEHHHHTSS TSAASLGQLL MFGVGGGDHH QQQQYMSSCS SVDISNNTSA AAAAAAAAAG  240
LQESFMFGGL QFQQQEEDTN SLLSPAAAAS GNDIMTYEHH EMISPSSFFF YGDGAGAVRH  300
TPSPSSPPSI TRAELIAGIT VWKAENAVAE KGFEKLLKIL KKKLPKDNEL PDKLFRRWKK  360
ELNKFVENKE TPEFKGRYEK IRDHWPAFVA HKTSEKSKKM SATNKQNAAK KKHHHRTGSG  420
FPVMRIQWEE TFPLTTRRLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-23481537107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0095871e-101CT009587.1 Triticum turgidum.
GenBankEU8359801e-101EU835980.1 Triticum aestivum clone BAC 502E09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200060.11e-143transcription factor RAX2-like
TrEMBLM7Z5G70.0M7Z5G7_TRIUA; Transcription factor RAX1
STRINGTRIUR3_21241-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.18e-63myb domain protein 36