PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_21241-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 440aa MW: 49196 Da PI: 10.296 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.5 | 4.2e-15 | 48 | 99 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmg...kgRtlkqcksrwqkyl 48 +g+W++eEd +l+d+++ +G+g +W + + + ++R++k+c++rw++yl TRIUR3_21241-P1 48 KGPWSPEEDRKLKDYIHTHGTGgNWIALPTKADdsgLKRCGKSCRLRWLNYL 99 79************************************************97 PP | |||||||
2 | Myb_DNA-binding | 37.7 | 4.6e-12 | 106 | 148 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd + +++ G++ W+ Ia+ ++ gRt++++k++w++ TRIUR3_21241-P1 106 GDFSEEEDRVICALFAAIGSR-WSIIAAQLP-GRTDNDVKNYWNT 148 689******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.424 | 43 | 99 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.09E-26 | 45 | 146 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-11 | 47 | 101 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.4E-14 | 48 | 99 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-23 | 49 | 106 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.99E-8 | 50 | 99 | No hit | No description |
PROSITE profile | PS51294 | 22.656 | 100 | 154 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-11 | 104 | 152 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-10 | 106 | 148 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-22 | 107 | 153 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.30E-7 | 108 | 148 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 440 aa Download sequence Send to blast |
MAIDIRCETC SNNIVVERVL SKALVRIAVL AFSLQRRSSM AQKIRVKKGP WSPEEDRKLK 60 DYIHTHGTGG NWIALPTKAD DSGLKRCGKS CRLRWLNYLR PNIKHGDFSE EEDRVICALF 120 AAIGSRWSII AAQLPGRTDN DVKNYWNTKL KKKQLHLLIA AAAQSTHGQQ YSSRPPAPPF 180 TVEHHHHTSS TSAASLGQLL MFGVGGGDHH QQQQYMSSCS SVDISNNTSA AAAAAAAAAG 240 LQESFMFGGL QFQQQEEDTN SLLSPAAAAS GNDIMTYEHH EMISPSSFFF YGDGAGAVRH 300 TPSPSSPPSI TRAELIAGIT VWKAENAVAE KGFEKLLKIL KKKLPKDNEL PDKLFRRWKK 360 ELNKFVENKE TPEFKGRYEK IRDHWPAFVA HKTSEKSKKM SATNKQNAAK KKHHHRTGSG 420 FPVMRIQWEE TFPLTTRRLR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-23 | 48 | 153 | 7 | 107 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT009587 | 1e-101 | CT009587.1 Triticum turgidum. | |||
GenBank | EU835980 | 1e-101 | EU835980.1 Triticum aestivum clone BAC 502E09, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020200060.1 | 1e-143 | transcription factor RAX2-like | ||||
TrEMBL | M7Z5G7 | 0.0 | M7Z5G7_TRIUA; Transcription factor RAX1 | ||||
STRING | TRIUR3_21241-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 8e-63 | myb domain protein 36 |