PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_21221-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 174aa MW: 18323.4 Da PI: 10.2951 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 50.7 | 5.9e-16 | 3 | 82 | 43 | 128 |
NAM 43 ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 +P+dLp + +e ++ yfFs+r+ +g r++ra + gy katgk+k+v+++ k+ l g+k+ L+f++g++ +tdWv+heyrl TRIUR3_21221-P1 3 DPSDLPGA--SEGESAYFFSQRQG---RGGRRRRA-AGGYGKATGKEKPVFVQlpvgKRLLAGVKTALAFHRGKS----RTDWVLHEYRL 82 79***943..466889****9976...57899997.56**************999977778**********6544....79*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 21.811 | 1 | 109 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 7.59E-17 | 3 | 109 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.8E-9 | 16 | 82 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MPDPSDLPGA SEGESAYFFS QRQGRGGRRR RAAGGYGKAT GKEKPVFVQL PVGKRLLAGV 60 KTALAFHRGK SRTDWVLHEY RLAGAAEQNK GANDGSQSSE WGVGRVALKS RARRTAAGGE 120 TTGDHQQEQP SPSPSSTSSC ITDHACHAPD QEPSVRTMAA AMAKVTTTAV LGCS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-11 | 3 | 82 | 56 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK368913 | 1e-139 | AK368913.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2082C12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020168455.1 | 6e-74 | NAC domain-containing protein 41-like | ||||
TrEMBL | M7YJV2 | 1e-124 | M7YJV2_TRIUA; NAC domain-containing protein 2 | ||||
STRING | TRIUR3_21221-P1 | 1e-125 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12805 | 27 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.2 | 8e-13 | NAC domain containing protein 41 |