PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_20779-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

G2-like

Protein Properties

Length: 378aa MW: 40129.3 Da PI: 5.613

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_20779-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	89.7	2.6e-28	233	283	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 kpr++W+peLH+rF++a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQ TRIUR3_20779-P1 233 KPRRCWAPELHRRFLQALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQ 283 79************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.058	230	290	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-23	231	283	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.11E-12	232	283	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.6E-23	233	283	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MEMDVPPAQA DRDGARRRLR DYLLALEEER RKIHVFQREL PLCLDLVTQT IEGMKSQMGG 60 AASEETVSDH GGPVLEEFIP LKPSLSLSSS DDETSTHAAV APVSNAKAET PPPTPETKKA 120 MPDWLQSAQL SSAWSEPQQS SSLQKVLPCR PVALNATRTG GAFHPFEKEK QPEPELPASS 180 TTAPASSALV GDSGDKATSD TEVHDKDSKD ATEKDTDKDK DKEGQSQPPN NRKPRRCWAP 240 ELHRRFLQAL QQLGGSHVAT PKQIRELMKV DGLTNDEVKS HLQSDLTFVA LGCSGPPSGG 300 HAPAPAAAAA AAAEATNVAP GSANQVYAPT ATLPTGPKPH LEKQSSRQSE GPRSGVNSDS 360 DNPTTSSSSS QATSAGHP

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MEMDVPPAQA DRDGARRRLR DYLLALEEER RKIHVFQREL PLCLDLVTQT IEGMKSQMGG  60
AASEETVSDH GGPVLEEFIP LKPSLSLSSS DDETSTHAAV APVSNAKAET PPPTPETKKA  120
MPDWLQSAQL SSAWSEPQQS SSLQKVLPCR PVALNATRTG GAFHPFEKEK QPEPELPASS  180
TTAPASSALV GDSGDKATSD TEVHDKDSKD ATEKDTDKDK DKEGQSQPPN NRKPRRCWAP  240
ELHRRFLQAL QQLGGSHVAT PKQIRELMKV DGLTNDEVKS HLQSDLTFVA LGCSGPPSGG  300
HAPAPAAAAA AAAEATNVAP GSANQVYAPT ATLPTGPKPH LEKQSSRQSE GPRSGVNSDS  360
DNPTTSSSSS QATSAGHP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that may play a role in response to nitrogen. May be involved in a time-dependent signaling for transcriptional regulation of nitrate-responsive genes. Binds specifically to the DNA sequence motif 5'-GAATC-3' or 5'-GAATATTC-3'. Represses the activity of its own promoter trough binding to these motifs.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00160	DAP	Transfer from AT1G25550	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by nitrate. {ECO:0000269\|PubMed:23324170}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK361638	0.0	AK361638.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1145I13.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020198678.1	0.0	myb family transcription factor EFM-like
Refseq	XP_020198679.1	0.0	myb family transcription factor EFM-like
Swissprot	Q6Z869	1e-106	NIGT1_ORYSJ; Transcription factor NIGT1
TrEMBL	M8ACD6	0.0	M8ACD6_TRIUA; Two-component response regulator ARR1
STRING	TRIUR3_20779-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6470	37	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	2e-46	G2-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Sawaki N, et al. A nitrate-inducible GARP family gene encodes an auto-repressible transcriptional repressor in rice. Plant Cell Physiol., 2013. 54(4): p. 506-17 [PMID:23324170]