PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_20682-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 310aa    MW: 33881.2 Da    PI: 8.1805
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_20682-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643.2e-204695255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +y+G+r+++ +g+W+AeIrdps+     r++lg+++taeeAa+a++a ++k++g
  TRIUR3_20682-P1 46 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTYDTAEEAARAYDAEARKIRG 95
                     69*******.**********965...4*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.5E-3946109IPR001471AP2/ERF domain
CDDcd000181.28E-3246105No hitNo description
PROSITE profilePS5103224.18446103IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-3246104IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-2246104IPR016177DNA-binding domain
PfamPF008471.6E-124795IPR001471AP2/ERF domain
PRINTSPR003678.4E-124758IPR001471AP2/ERF domain
PRINTSPR003678.4E-126985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MGVQLDAGRP ERRVKCVRAA GEPERRHAVQ HDGPAAKPVK RARKNQYRGI RQRPWGKWAA  60
EIRDPSKGVR VWLGTYDTAE EAARAYDAEA RKIRGKKAKV NFPEDAPTVQ KSTLKPTAAK  120
SAKLAPPPKV CEDEPFNHLN RGDNDLFAMF AFNDKKVPAK PAESVDSLLP VKLKPLVPTE  180
TFGMNMLSDQ SSNSFGSTDF GWDDEAMTPD YTSVFVPNAA AMPTYGEPAY LQGGAPKRMR  240
NNFGVAVLPQ GNGAQDIPAF DHEMKYSLPY VESSSDGSMD SLLLNGAMQD GASSGDLWSL  300
DELFMAAGGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2042103163ATERF1
3gcc_A1e-2042103163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN6811910.0JN681191.1 Triticum aestivum ethylene responsive transcription factor 5a (ERF5a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194933.10.0ethylene-responsive transcription factor 1-like
TrEMBLM7YTK30.0M7YTK3_TRIUA; Ethylene-responsive transcription factor 1
STRINGTRIUR3_20682-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112003142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.35e-29related to AP2 12