PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_20613-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 75aa    MW: 8372.78 Da    PI: 10.9663
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_20613-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.8e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W +eEd  l  +v+++G+  +W + +r++g++R++k+c++rw++yl
  TRIUR3_20613-P1 14 KGPWAAEEDAVLRAYVAEHGTAgNWIALPRKIGLNRCGKSCRLRWLNYL 62
                     79******************99**************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-21572IPR009057Homeodomain-like
SuperFamilySSF466891.79E-16872IPR009057Homeodomain-like
PROSITE profilePS5129420.863966IPR017930Myb domain
SMARTSM007171.1E-101364IPR001005SANT/Myb domain
PfamPF002494.7E-141462IPR001005SANT/Myb domain
CDDcd001672.59E-81662No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    Send to blast
MGRAPCCDKA SVKKGPWAAE EDAVLRAYVA EHGTAGNWIA LPRKIGLNRC GKSCRLRWLN  60
YLRPNIRHGG VTRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions as regulator of genes affecting cell wall organization and remodeling. Activates genes related to the primary cell wall and represses genes related to the secondary cell wall and expansins. Required for the regulation of longitudinal cell growth in stems, leaves, petioles, roots, flowers and siliques. {ECO:0000269|PubMed:24563287}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0632609e-74BT063260.1 Zea mays full-length cDNA clone ZM_BFc0043P16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186746.12e-45transcription factor MYB36-like
SwissprotF4JSU02e-41MYB87_ARATH; Transcription factor MYB87
TrEMBLM7ZF811e-47M7ZF81_TRIUA; Transcription factor RAX3
STRINGTRIUR3_20613-P12e-48(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.16e-44myb domain protein 87
Publications ? help Back to Top
  1. Fujiwara S, et al.
    Chimeric repressor analysis identifies MYB87 as a possible regulator of morphogenesis via cell wall organization and remodeling in Arabidopsis.
    Biotechnol. Lett., 2014. 36(5): p. 1049-57
    [PMID:24563287]