PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_20353-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 240aa MW: 26255.9 Da PI: 7.9369 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.3 | 4.1e-14 | 24 | 70 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 + WT+ Ed+ll + v++ Gg+ +W++I r ++ gR k+c++rw ++l TRIUR3_20353-P1 24 KMWTKREDDLLREQVRRCGGPhNWDSICRALP-GRNSKSCRLRWCQHL 70 67******************************.***********9986 PP | |||||||
2 | Myb_DNA-binding | 47.4 | 4.3e-15 | 79 | 121 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T eEd l+v++ + +G++ W+tIa+ + gRt++ +k+rw+++ TRIUR3_20353-P1 79 PFTVEEDMLIVKYQAAYGNR-WSTIAEFLS-GRTDNAIKNRWNSV 121 89******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.882 | 18 | 71 | IPR017930 | Myb domain |
SMART | SM00717 | 8.1E-11 | 22 | 72 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.91E-27 | 22 | 118 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.0E-12 | 23 | 70 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-15 | 26 | 75 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.25E-12 | 26 | 70 | No hit | No description |
PROSITE profile | PS51294 | 18.506 | 73 | 126 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-13 | 76 | 124 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.49E-12 | 79 | 122 | No hit | No description |
Pfam | PF00249 | 1.1E-12 | 79 | 122 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-19 | 79 | 122 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
SSFPATSGSD AGACDDGLPH AAKKMWTKRE DDLLREQVRR CGGPHNWDSI CRALPGRNSK 60 SCRLRWCQHL DPRVEAVKPF TVEEDMLIVK YQAAYGNRWS TIAEFLSGRT DNAIKNRWNS 120 VLHKRAPTLQ GPPRPLAPSA DRKAASPEVT PGCLPLFPLA SGDVRMSSRS TEVVPEAETC 180 AAARECLELF PLVPGDIRGD AGTAAPSDMS CGAGDPLTEL RIWPAARVVF DVMPLQAYRM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3zqc_A | 2e-26 | 27 | 145 | 6 | 124 | MYB3 |
3zqc_D | 2e-26 | 27 | 145 | 6 | 124 | MYB3 |
3zqc_G | 2e-26 | 27 | 145 | 6 | 124 | MYB3 |
3zqc_J | 2e-26 | 27 | 145 | 6 | 124 | MYB3 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF951919 | 1e-142 | JF951919.1 Triticum aestivum clone TaMYB21 R2R3-MYB protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198995.1 | 1e-145 | transcription factor MYB44-like | ||||
TrEMBL | T1MR24 | 1e-176 | T1MR24_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_20353-P1 | 1e-177 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4960 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 4e-34 | myb domain protein 77 |