PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_20025-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 194aa    MW: 21971 Da    PI: 5.1489
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_20025-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.81.2e-10981731698
                      EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      + +p +f++++  +   +++ +l++ +g sW+v++  +   gr++l +GW  +   +++k g +v+Fkl      +l+v +f+
  TRIUR3_20025-P1  98 IPMPLDFTKHFVAV---PTEFKLRNNTGCSWKVTV--KLMNGRMTLDQGWATYTVVHHIKIGYMVTFKLLT--PDTLKVIIFD 173
                      56788899666666...4579**************..66666789***********************865..4446777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.22E-1480175IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-1381175IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.783175IPR003340B3 DNA binding domain
CDDcd100174.38E-985173No hitNo description
SMARTSM010194.1E-486175IPR003340B3 DNA binding domain
PfamPF023622.0E-897173IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MERKVDSERR EGIEESNEMG TEVLPAVDNK GKQPLHPMPD EVVLPPTTEE DTKTPEVGDD  60
EGMEEPPGNK RHNYGHYHQE DGPTHFCKVI LAPKLECIPM PLDFTKHFVA VPTEFKLRNN  120
TGCSWKVTVK LMNGRMTLDQ GWATYTVVHH IKIGYMVTFK LLTPDTLKVI IFDDDGIEVV  180
NKCGKHDEAF AARD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLT1MQ651e-142T1MQ65_TRIUA; Uncharacterized protein
STRINGTRIUR3_20025-P11e-143(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1723937
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24690.12e-06B3 family protein