PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_19962-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | CPP | ||||||||
Protein Properties | Length: 242aa MW: 26232.8 Da PI: 4.4943 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 45.5 | 1.5e-14 | 6 | 43 | 5 | 42 |
TCR 5 gCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 +C+C+k++Cl++YC Cf+a ++C+e+C+C++C+N+e++ TRIUR3_19962-P1 6 HCTCEKTQCLQRYCHCFEAWVFCDERCSCQGCRNTEDN 43 8*********************************9975 PP | |||||||
2 | TCR | 49.7 | 7.5e-16 | 85 | 122 | 2 | 39 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 + kgCnC++s+C+k+YCeCf++g+ Cs++C+C++C N+ TRIUR3_19962-P1 85 HVKGCNCRNSECKKLYCECFKHGVGCSDKCQCTGCANT 122 689**********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 2.7E-9 | 2 | 43 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 27.077 | 3 | 124 | IPR005172 | CRC domain |
Pfam | PF03638 | 2.9E-11 | 6 | 41 | IPR005172 | CRC domain |
SMART | SM01114 | 2.4E-12 | 84 | 125 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.3E-11 | 87 | 122 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MDDLPHCTCE KTQCLQRYCH CFEAWVFCDE RCSCQGCRNT EDNSDEVDER AEYIMKKKPD 60 AFKPKIIAGD GPGLQQQRQQ VAGVHVKGCN CRNSECKKLY CECFKHGVGC SDKCQCTGCA 120 NTFGVKGAAQ PHSDSPEGTS GGSGETLARW NGSSANINDD MASQSTEASI SMDDIHIPSE 180 LSDMDVDLGP PNQALGDGGL EDIIFNHSDF QHNVDPQTHE GFAKQGDGSL SNDANSLLQQ 240 GP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 6e-12 | 7 | 121 | 14 | 120 | Protein lin-54 homolog |
5fd3_B | 6e-12 | 7 | 121 | 14 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-126 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020161254.1 | 1e-161 | protein tesmin/TSO1-like CXC 2 | ||||
TrEMBL | M7YFQ2 | 1e-180 | M7YFQ2_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_19962-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12267 | 23 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04850.1 | 6e-32 | Tesmin/TSO1-like CXC domain-containing protein |