PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_19577-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 404aa    MW: 44008.6 Da    PI: 6.6669
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_19577-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.62.9e-10261303552
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 
                      h + ErrRR+r+N++fe Lr llP+       + +Ka++L  + +Y++
  TRIUR3_19577-P1 261 HMISERRRRERLNESFEALRGLLPPG-----SRKDKATVLANTLDYMN 303
                      8899********************95.....48899******999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.837256305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.02E-15258329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-14260324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-8261303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-10262311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.00104271305No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
CRFRNMMDTL FVLGQESRLR ILQQAASRVP ACAYLCVWAP IPAGGHRPTP PFTAANRARR  60
QLLCLDAWLR DGGSGDVDRE RALFDAYKGS LCAAVSGCVP GWAYEDGRAY MELSEHELAA  120
SASSPVQLQF YQEAGIKVAA FMGCESGEIE VGMSTPAGQM NLQAGLGQIF SEDFFQQSLL  180
EELLQLPPTR PSSSFSSLPS ISLDSPADGS RMIKMGISIL RRMNTLNNNG QERTTGTTTQ  240
RWREEDEEAA PPAPTSSQLH HMISERRRRE RLNESFEALR GLLPPGSRKD KATVLANTLD  300
YMNILIAQIS ELEARNRSLE TAAQIQQHQR ITNGNSRDRP DQAALQAGGS SKRVQVEVAT  360
SSAGASTSSS SFSTGQCREV TIRVAAAGDL SDLVARVLAL LKDT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1264269ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3617110.0AK361711.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1146P09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155039.11e-120putative transcription factor bHLH041
TrEMBLT1MNZ50.0T1MNZ5_TRIUA; Uncharacterized protein
STRINGTRIUR3_19577-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39773367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-13bHLH family protein