PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_19255-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 450aa    MW: 49320.6 Da    PI: 9.6456
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_19255-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS155.16.4e-48912941203
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                      l++lL++cA  v++g++ +a+ +L+++ +las d+  ++qRlaa+f+ ALa +l++  ++l++al +s++s+ +   + aa++  +++ P+lk+
  TRIUR3_19255-P1  91 LISLLYQCASEVAAGEFDRANLCLEHIMQLASLDApHTLQRLAAVFADALACKLLKLLPGLSRALLSSSSSD-DAHLVPAARRHMFDMLPFLKL 183
                      5799*******************************99****************************9888874.5555567888999******** PP

             GRAS  94 shltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                      ++lt+N+aI+ea+ege+ vH++D++  + +++QW+aL++++  R++g+p+lRiT+v++    ske l  +   L + Ae++++pf+fn+ v+ r
  TRIUR3_19255-P1 184 AYLTTNHAIVEAMEGERFVHVVDLSgpAANPAQWIALFHSFRGRRDGTPNLRITAVHE----SKEFLAGMSAVLVREAEAFDIPFQFNA-VEAR 272
                      ************************866899****************************....9**************************.7999 PP

             GRAS 186 ledleleeL....rvkpgEala 203
                      led+++++L    rv++gEala
  TRIUR3_19255-P1 273 LEDMDFDALrhnlRVRSGEALA 294
                      ***9998874444777799998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098525.80665450IPR005202Transcription factor GRAS
PfamPF035142.2E-4591294IPR005202Transcription factor GRAS
SuperFamilySSF577561.39E-5415446IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.105.6E-5424445IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MAEGCRLLGG PTDLYKFLGL IGVEPRTWGG IASIMFQQQQ PQPQPQRQQQ QEDVMSSATS  60
SPASTLYSPM PYAFAGTSVQ ELSSDQCSVR LISLLYQCAS EVAAGEFDRA NLCLEHIMQL  120
ASLDAPHTLQ RLAAVFADAL ACKLLKLLPG LSRALLSSSS SDDAHLVPAA RRHMFDMLPF  180
LKLAYLTTNH AIVEAMEGER FVHVVDLSGP AANPAQWIAL FHSFRGRRDG TPNLRITAVH  240
ESKEFLAGMS AVLVREAEAF DIPFQFNAVE ARLEDMDFDA LRHNLRVRSG EALAGGLTPL  300
QIIARSSPSS FGELLERELN TRLQLSPDAS AFSSMSPQSP IGGHFPAVGQ QRPQIGSLLL  360
GLNWIKNTRD VTELNVEIKK EHQVLMVNKT TGFTKKGKGK KGNFKKNGKQ VAAQVKKPKS  420
GPKPKTECFY YKGTGHSKRN CPKHTSLRAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-189729425216Protein SCARECROW
5b3h_A5e-189729424215Protein SCARECROW
5b3h_D5e-189729424215Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1395401KGKGKKG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152680.10.0scarecrow-like protein 3
TrEMBLT1MN400.0T1MN40_TRIUA; Uncharacterized protein
STRINGTRIUR3_19255-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.12e-44scarecrow-like 3