PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_19251-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HB-other
Protein Properties Length: 420aa    MW: 46815.1 Da    PI: 8.5688
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_19251-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.64.2e-081375656
                     S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
         Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
                     +ft+ ++ e+ee+ +   n  p+++ ++ LA+k            ++ +qV +WFqNrR+ ++
  TRIUR3_19251-P1 13 RFTHAEVAEMEEHLRHlnNAIPQRNVIQGLAEKFtasaaragkiPVQYKQVWNWFQNRRYSQR 75
                     69999*******999554999*********************99999*************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.35E-101277IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-61377IPR009057Homeodomain-like
PfamPF000461.2E-51375IPR001356Homeobox domain
CDDcd000860.009961375No hitNo description
PROSITE profilePS500719.6371377IPR001356Homeobox domain
PfamPF167196.2E-30216313IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MGRPPSSGGP AFRFTHAEVA EMEEHLRHLN NAIPQRNVIQ GLAEKFTASA ARAGKIPVQY  60
KQVWNWFQNR RYSQRARTPR GAPPPQGKML PTGAEEHHPA SFRAQGYDVA AFLSHRLFET  120
GDPDFIIVPA RSIHNQSLAA SLPHSQQKAG AFLSQRALLH YAAACGLEKQ AHLLQNLVPR  180
EDPDSYAFAA RLVSRLEYGL RREKQTVDDL MWLVKLEVKV RFSGFGPEED EWINVRKCVR  240
LRSLPCESAE CVAVLPGDLI LCFQEGKEQA LYFDARVLDA QRRRHDVRGC RCRFLVRYDH  300
DHSEEIVPLR KVCRRPETDF RLQILHASRA AASADAQNVS PVEQKPQKAH KMMDVNTAEV  360
TVVRNPDQGG PSDKPAAPLP AAAAGTRGDS VSDVQMGNVE VIPKVEAANE AHDDKMNVGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A9e-3121531732134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B9e-3121531732134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A9e-3121531732134SHH1 SAWADEE
4iur_B9e-3121531732134SHH1 SAWADEE
4iut_A9e-3121531732134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B9e-3121531732134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A9e-3121531732134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B9e-3121531732134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A9e-3121531732134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B9e-3121531732134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3648150.0EU364815.1 Triticum aestivum homeobox-like resistance protein (HLRG) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563870.11e-150protein SAWADEE HOMEODOMAIN HOMOLOG 2
RefseqXP_010227690.11e-150protein SAWADEE HOMEODOMAIN HOMOLOG 2
SwissprotQ8RWJ71e-60SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLM7ZU520.0M7ZU52_TRIUA; Uncharacterized protein
STRINGTRIUR3_19251-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41902948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.19e-50sequence-specific DNA binding transcription factors;sequence-specific DNA binding