PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_19131-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | Whirly | ||||||||
Protein Properties | Length: 364aa MW: 40028.1 Da PI: 9.6161 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 127.2 | 8.9e-40 | 71 | 192 | 2 | 139 |
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 v+k+kaal++ +++p f++++sg +++r+G+++l++ +a+++rkyd+ kkq fals+tev++l++l++ esceffhdp++k+s + +a TRIUR3_19131-P1 71 VFKGKAALSISPILPLFTKVESGGSRVDRNGSVMLTFFPAVGQRKYDYTKKQLFALSPTEVGSLISLGPAESCEFFHDPSMKSST---LYRA-- 159 9********************************************************************************9985...5554.. PP Whirly 96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 + ++ls+t s k+ne++svPv+kaefav+r++l+ TRIUR3_19131-P1 160 ---------IIFSLSTTIS--KTNERLSVPVTKAEFAVMRTALS 192 .........5789999988..9*******************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 2.1E-55 | 58 | 212 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 7.85E-54 | 64 | 233 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 1.0E-40 | 71 | 189 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MKTYDYINRV VLTLPLPVYE GLTLSMKIGR GVTDLKDVLW SGSLTFKHAL STSAANVDEN 60 ASVKKYASYT VFKGKAALSI SPILPLFTKV ESGGSRVDRN GSVMLTFFPA VGQRKYDYTK 120 KQLFALSPTE VGSLISLGPA ESCEFFHDPS MKSSTLYRAI IFSLSTTISK TNERLSVPVT 180 KAEFAVMRTA LSFALPHIMG WDQALSTHPQ STSTSASKPR FERPNPASEW DRELSDFMVP 240 KEIEVRMKST MKPLVSVQCT YRFMANVYSR LSYNLRLMSS VAVQSCGLCK EPQRTRTGYT 300 QRIGYNPAET NPCSVMIPDT TFLSSTTGRN CTGEGGDSIF SMASTAIASA VIVLGFLKEV 360 KQAC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4kop_A | 4e-58 | 66 | 208 | 12 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_B | 4e-58 | 66 | 208 | 12 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_C | 4e-58 | 66 | 208 | 12 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_D | 4e-58 | 66 | 208 | 12 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK249976 | 1e-163 | AK249976.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf60h16, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020180430.1 | 1e-130 | single-stranded DNA-bindig protein WHY2, mitochondrial | ||||
TrEMBL | M7ZQD6 | 0.0 | M7ZQD6_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_19131-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3012 | 38 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71260.1 | 8e-60 | WHIRLY 2 |