PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_19081-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NF-X1
Protein Properties Length: 565aa    MW: 62452.4 Da    PI: 8.8725
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_19081-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X122.23.1e-07124143119
         zf-NF-X1   1 CGkHkCqklCHeGpCpp.Cp 19 
                      CG+HkC + CH+GpC++ C+
  TRIUR3_19081-P1 124 CGRHKCPERCHRGPCDVtCR 143
                      *****************9*7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd060081.71E-9114188No hitNo description
SMARTSM004380.0023124144IPR000967Zinc finger, NF-X1-type
SMARTSM0043825213228IPR000967Zinc finger, NF-X1-type
SMARTSM00438140236281IPR000967Zinc finger, NF-X1-type
SMARTSM0043894318357IPR000967Zinc finger, NF-X1-type
SMARTSM004380.44393414IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MSAAAASIQI PTPAASTPAS CFATLGHVLH ARLLFLTPGA SAGRTVSPGA VHISAILVRV  60
NAINALAVNS TVVRWIAMMG HAHRVLCGGI TNRTCPCGKK DYPRLECDVE AATCGSTCEK  120
VLGCGRHKCP ERCHRGPCDV TCRLVIKKSC RCGVLKKEAY IGACSPCPLM KTISCFCGKT  180
YFEVPCGTEK NQKPPKCSKR CNIDRLCRHK LDCRPHKCHY GACPPCKLIC GEELSCGHKC  240
KERCHGSIPP PNPEFTVKPM KKKMEKHIEC TPGTPCPPCQ EVVLVPCFGE HLGQERAIPC  300
SKSRQFPCQN LCGNLLHCGN HYCTKDCHVL EIPSDQRKAD TILSLSRNNT LAEPCERCNL  360
RCQRCVYYNN LNAKQQLKAR SCSGPCHRKL PNCPHLCSEI CHPGQCPSVD QCMKKVNVRC  420
ACNTLKKEWV CQDVLKEYRR SGRDPKEVPK GQFGVGLLAC GGDCVKKVNV SAAELHLRKV  480
HETKSPAAEV ANVPKRRKKR DRGAQEPVQV SMWQQIKWYL VVIIALAGLV VLGLVIWKGV  540
YQISDWMNEM EEQKARERLL RAGRL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2525650.0AK252565.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf156f05, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188359.10.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK81e-147NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLM7ZK640.0M7ZK64_TRIUA; NF-X1-type zinc finger protein NFXL2
STRINGTRIUR3_19081-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107733537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.11e-143sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors