PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_18920-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | TALE | ||||||||
Protein Properties | Length: 439aa MW: 47764.2 Da PI: 9.4255 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 31.3 | 3.5e-10 | 307 | 344 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + TRIUR3_18920-P1 307 FEHflHPYPTDGDKQMLAKQTGLTRNQVSNWFINARVR 344 664459******************************88 PP | |||||||
2 | BELL | 71.7 | 1.3e-23 | 187 | 241 | 18 | 72 |
BELL 18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 V+krY+qy++q+q+vi+sFe vag +a+p+t+lAl+ ++rhFrc+k +i +q+ TRIUR3_18920-P1 187 TVCKRYRQYYQQVQAVIASFESVAGFSNAAPFTALALRVMARHFRCIKGMILSQL 241 69*************************************************9996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 2.4E-20 | 67 | 239 | IPR006563 | POX domain |
Pfam | PF07526 | 7.8E-35 | 72 | 237 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.26 | 285 | 348 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.80E-12 | 288 | 349 | No hit | No description |
SMART | SM00389 | 3.8E-10 | 288 | 352 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.08E-17 | 290 | 357 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.8E-28 | 291 | 352 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.3E-19 | 305 | 344 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0010223 | Biological Process | secondary shoot formation | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048457 | Biological Process | floral whorl morphogenesis | ||||
GO:0048645 | Biological Process | organ formation | ||||
GO:0080006 | Biological Process | internode patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 439 aa Download sequence Send to blast |
MPQGQQLVLN GLTAQQVTAQ QFPQIPTQNF SLSLSSASSN PATTPPAPRK QEPGAAAPAA 60 GPYGPFTGYA TVLGRSRFLG PAQKLLEEIC DVGGAAAHVD HSVPDEGLLD ADAMDGADDA 120 AGHELDTSGP MSGAEQQWKK TRLISMMEER IKDWMLISFA ALSTPFANII CYMKPQLISS 180 VLGRFGTVCK RYRQYYQQVQ AVIASFESVA GFSNAAPFTA LALRVMARHF RCIKGMILSQ 240 LRNTSKMPVK EGMSKDITIF GLGGGGAPVG GFQRGGSVNG FGQPHNIWRP QRGLPERSVT 300 VLRAWLFEHF LHPYPTDGDK QMLAKQTGLT RNQVSNWFIN ARVRLWKPMV EEIHNLEMRQ 360 VHKHSPHDKG QQHGAHGQAH QHSSQQQQQQ RTSCMCAVLA GDWWWAGQQA GSVSAVGGGG 420 AMHVVFPGRE SGRGSERCN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 3e-16 | 294 | 352 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 3e-16 | 294 | 352 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB546647 | 0.0 | AB546647.1 Triticum aestivum WBLH4 mRNA for BEL1-type homeodomain protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020175344.1 | 0.0 | BEL1-like homeodomain protein 9 | ||||
TrEMBL | M7ZUN3 | 0.0 | M7ZUN3_TRIUA; BEL1-like homeodomain protein 9 | ||||
STRING | TRIUR3_18920-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2528 | 38 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02030.1 | 8e-52 | TALE family protein |