PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_18678-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 237aa MW: 27464.9 Da PI: 8.1221

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_18678-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60.3	6.1e-19	62	147	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+ YAk+ GF v ++++++ +++ +t t+ Cs++gk++ ++k+ + ++++tr++C ak + +++ ++k+++t+l l+HnH+++p TRIUR3_18678-P1 62 RFYKGYAKKKGFGVMRRTTRYG-EDNMVTYFTLACSRQGKTQCSEKN---SFMPNPSTRMQCPAKSNFSRR-EEKFCITSLTLDHNHPISP 147 5*************999998.5666************9999...999*************9.9************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.3E-16	62	147	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
IEPGLNLDEV AEQNRPVLDE DDEDAFIVEE IGDSSDERQV KPIRTLESRK GMVFDSEDDA 60 VRFYKGYAKK KGFGVMRRTT RYGEDNMVTY FTLACSRQGK TQCSEKNSFM PNPSTRMQCP 120 AKSNFSRREE KFCITSLTLD HNHPISPSKS RFFRCHKKLD LHSKRRLELN DQAGIRMNKN 180 FGSLVMEAGG YGNLEFGEKE CRNYLQEKRR LQLGAGDAHA VYQYFLRMQS KDPDFFH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020171727.1	1e-130	protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
Refseq	XP_020171728.1	1e-130	protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
Refseq	XP_020171729.1	1e-130	protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
Refseq	XP_020171730.1	1e-130	protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
Refseq	XP_020171731.1	1e-130	protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
Refseq	XP_020171732.1	1e-130	protein FAR-RED IMPAIRED RESPONSE 1-like isoform X2
Refseq	XP_020171733.1	1e-130	protein FAR-RED IMPAIRED RESPONSE 1-like isoform X2
Refseq	XP_020171734.1	1e-130	protein FAR-RED IMPAIRED RESPONSE 1-like isoform X2
Refseq	XP_020171735.1	1e-130	protein FAR-RED IMPAIRED RESPONSE 1-like isoform X2
TrEMBL	T1MLI4	1e-177	T1MLI4_TRIUA; Uncharacterized protein
STRING	TRIUR3_18678-P1	1e-178	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16056	5	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.2	7e-14	FAR1-related sequence 4