PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_18560-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NAC

Protein Properties

Length: 369aa MW: 40587.9 Da PI: 7.6337

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_18560-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	152.9	1.4e-47	18	144	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 pGfrFhPt+eel+ +yL + + gkkl++ ++i +++iy+++PwdLp ++k +e+ewyfF++rd+k+ +g r+nr+t++g+Wkatg+d+++ s+ TRIUR3_18560-P1 18 PGFRFHPTEEELLGFYLSRVALGKKLHF-DIIGTLNIYRHDPWDLPGMAKIGEREWYFFVPRDRKAGSGGRPNRTTERGFWKATGSDRAIRSTv 110 9***********************99.99***********888999***********************************998 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++glkktLvfy grap+g+ktdWvm+eyrl TRIUR3_18560-P1 111 dSKRVIGLKKTLVFYLGRAPRGTKTDWVMNEYRL 144 88889*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.97E-58	11	164	IPR003441	NAC domain
PROSITE profile	PS51005	54.849	16	164	IPR003441	NAC domain
Pfam	PF02365	3.1E-24	18	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MAMAAVASPT MEVDQDLPGF RFHPTEEELL GFYLSRVALG KKLHFDIIGT LNIYRHDPWD 60 LPGMAKIGER EWYFFVPRDR KAGSGGRPNR TTERGFWKAT GSDRAIRSTV DSKRVIGLKK 120 TLVFYLGRAP RGTKTDWVMN EYRLPDTGAP PPQEDTVLCK VYRKATPLKE LEQRAFEMEE 180 MKQRSGSNGG YDYSGAARAC PVPAAGDFYL SPSDDVQDNF LIPSSSSSSS VALSGKSSSH 240 DAPRVAKKEA DVATVTVAST SSLSQTVNVP FHLQLPAVNP PCGLQLQEAN HGMSNMSSLE 300 LPAANHGLSN MSNLRVPAAN QGVLDLPSLQ LPAASSRGVF DWLNDPFLTQ LRSPWQDQHC 360 MSPYAHLLY

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MAMAAVASPT MEVDQDLPGF RFHPTEEELL GFYLSRVALG KKLHFDIIGT LNIYRHDPWD  60
LPGMAKIGER EWYFFVPRDR KAGSGGRPNR TTERGFWKAT GSDRAIRSTV DSKRVIGLKK  120
TLVFYLGRAP RGTKTDWVMN EYRLPDTGAP PPQEDTVLCK VYRKATPLKE LEQRAFEMEE  180
MKQRSGSNGG YDYSGAARAC PVPAAGDFYL SPSDDVQDNF LIPSSSSSSS VALSGKSSSH  240
DAPRVAKKEA DVATVTVAST SSLSQTVNVP FHLQLPAVNP PCGLQLQEAN HGMSNMSSLE  300
LPAANHGLSN MSNLRVPAAN QGVLDLPSLQ LPAASSRGVF DWLNDPFLTQ LRSPWQDQHC  360
MSPYAHLLY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-48	18	166	19	167	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-48	18	166	19	167	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-48	18	166	19	167	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-48	18	166	19	167	NO APICAL MERISTEM PROTEIN
3swm_A	6e-48	18	166	22	170	NAC domain-containing protein 19
3swm_B	6e-48	18	166	22	170	NAC domain-containing protein 19
3swm_C	6e-48	18	166	22	170	NAC domain-containing protein 19
3swm_D	6e-48	18	166	22	170	NAC domain-containing protein 19
3swp_A	6e-48	18	166	22	170	NAC domain-containing protein 19
3swp_B	6e-48	18	166	22	170	NAC domain-containing protein 19
3swp_C	6e-48	18	166	22	170	NAC domain-containing protein 19
3swp_D	6e-48	18	166	22	170	NAC domain-containing protein 19
4dul_A	5e-48	18	166	19	167	NAC domain-containing protein 19
4dul_B	5e-48	18	166	19	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK367963	0.0	AK367963.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2065K10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020190295.1	0.0	NAC domain-containing protein 72-like
Swissprot	Q10S65	1e-140	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	M7ZM80	0.0	M7ZM80_TRIUA; Putative NAC domain-containing protein 94
STRING	TRIUR3_18560-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1770	38	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	9e-84	NAC domain containing protein 36

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]