PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_18146-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HSF
Protein Properties Length: 401aa    MW: 44569 Da    PI: 4.631
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_18146-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.64.8e-34251162102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl k+ye++ed+++++++sw   g sfvv+++ +f++++LpkyFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F +g+ +ll+
  TRIUR3_18146-P1  25 FLIKTYEMVEDPATSRVVSWGPGGASFVVWNPPDFSRDLLPKYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANDDFIRGHMHLLK 109
                      9****************************************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i+r+k 
  TRIUR3_18146-P1 110 NIHRRKP 116
                      ****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004157.4E-6121114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.4E-3521114IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.7E-3722114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.2E-192548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.4E-3025114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MDMDMDMEGG SQSQPQGASL SPAPFLIKTY EMVEDPATSR VVSWGPGGAS FVVWNPPDFS  60
RDLLPKYFKH NNFSSFIRQL NTYGFRKIDP ERWEFANDDF IRGHMHLLKN IHRRKPVHSH  120
SPQNQVNGPL AESERREYEE EISRLKHENS VLVAELQRQA QQQCAEETGR RSSRAADHAG  180
TGADRPFQQE EEGPDDRFLH RGARRGGRGA AGGNAEPFEK MELALVSMEK LVQRAGNYAP  240
SEDMFSAATA SASAAPSTDD PAHAGLQEAP VETGVDLQPT SPELAEPPGY AVQSPMLLFP  300
EIQEDKRNTT AEVDMSSEAS TTDTSQDETN AEAETPHEQA VANDLFWERF LTDTPKPLAV  360
EDSHESKDGV KMGLDCYWFG HRNNVDQITE QMGHLASAQK T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-231711413120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:12032317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2085460.0KF208546.1 Triticum aestivum heat shock factor A4c (HsfA4c) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168481.10.0heat stress transcription factor A-4d-like
SwissprotQ93VB51e-111HFA4D_ORYSJ; Heat stress transcription factor A-4d
TrEMBLM7Y9W90.0M7Y9W9_TRIUA; Heat stress transcription factor A-4d
STRINGTRIUR3_18146-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.12e-51HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Kojo K, et al.
    Regulatory mechanisms of ROI generation are affected by rice spl mutations.
    Plant Cell Physiol., 2006. 47(8): p. 1035-44
    [PMID:16816407]