PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_18005-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 202aa    MW: 22348.5 Da    PI: 6.1612
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_18005-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.32e-0624453455
                     TTS-STCHHHHHHHHHHHHHHH CS
              HLH 34 pskKlsKaeiLekAveYIksLq 55
                      s+K +Ka++L +A+eY+k+Lq
  TRIUR3_18005-P1 24 LSEKTDKASMLDEAIEYLKQLQ 45
                     589******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.632144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-62149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-52348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.37E-42548No hitNo description
PfamPF133591.5E-647139IPR027806Harbinger transposase-derived nuclease domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MVHSILSQLK TTSKRTRAAE VHNLSEKTDK ASMLDEAIEY LKQLQLQELE QGKLLNPAQY  60
LVADGNGYPL LRWLMVPFEG PVVPGSPEAH FNTAHKAMCR PARRAVRSLM GWGAIARLHE  120
EESPRAAVTC IGTCAMLHNV LLAREDYSAL APEEGEEEAE TDLGAMQSRR DHAAEEGFKV  180
DMRAVALRSA LAATMNDWRT PA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3557710.0AK355771.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1025J17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169798.11e-109protein ALP1-like
TrEMBLM7ZFN51e-147M7ZFN5_TRIUA; Transcription factor PIF1
STRINGTRIUR3_18005-P11e-148(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1505522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67110.34e-08bHLH family protein